DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fra and ptpru

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:XP_012812827.1 Gene:ptpru / 733850 XenbaseID:XB-GENE-922688 Length:1439 Species:Xenopus tropicalis


Alignment Length:689 Identity:138/689 - (20%)
Similarity:230/689 - (33%) Gaps:197/689 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   654 EREQKMVTKSHDDQQVN---------IQSLLPGRTYQFRVEANTNFGSGASSAPLEVSTQPEVNI 709
            :|:...:|.:...|:|:         :|...|.....:|..:.:..|:|.|:....|..:|...|
 Frog   221 QRQNGGITSAGVIQRVSHHRFLVSFQLQDAGPSEQDLYRCVSCSIHGAGVSNFAELVVKEPPTPI 285

  Fly   710 AGPPRNFEGYARSHKEIYVKWEEPT-----------VTNGEILKYRVYYSENDSGADLYHDSTAL 763
            |.|.....|              ||           :.:|.|::..:.|..:.|.....|..||.
 Frog   286 APPQLLRAG--------------PTYLIVQLNTRSIIGDGPIVRREIEYRVSGSSWKERHAVTAH 336

  Fly   764 EAVLTELRPHTDYVISVV---PFNRNGMGDSSAEIRVKTFSSTPSEPPNNVTLEVTSSSSITVHW 825
            ...|..|.|.:.|.|||:   | ...|.|.....:..:|..:.|...|..::........:|:.|
 Frog   337 TYKLWHLDPDSQYHISVLLTRP-GEGGTGKPGPALISRTKCAEPMRAPKGLSCSAEQPRQLTLQW 400

  Fly   826 EPPAEEDRNGQITGYKI-RYRKFKDAPQVKSTPANIRYF-ELSNLDRNAEYQVKIAAMTVNGSGP 888
            |          ..|:.| |...|.         ..:.|. |||::......:...:..|::|..|
 Frog   401 E----------AVGFNITRCHTFS---------VMLCYHTELSSIQDCVTAEGGSSQYTLHGLAP 446

  Fly   889 FTEWNRANTLENDLDETQVPGKPIW---------------ISIHPGANNIALHWGPPQHPEIKIR 938
            :...:....:.|  .|.:..||.:.               :.:.|..:.:.|.|..|..|...:.
 Frog   447 YRAVHCHLIITN--PEGRKEGKEVTCHTQEDVPGSIASESLILVPQEDAVLLMWDKPVEPNGVLT 509

  Fly   939 NYVLGW--------GRGIPD-ENTIELKETERYHILKNLESNMDYVVSLRARNVKGDGPPIYDNI 994
            .|.:|:        ...:|. ..|:.....|..|:|.||.....|::|:||||.||.||.:...:
 Frog   510 QYEIGYQIIESSDPSVSVPGIRGTVCKLPNETSHLLTNLLPGTTYLLSVRARNSKGYGPSVLTEL 574

  Fly   995 KTRDEEPV----DAPTPLE-----VPVGLRAITMSSSSIVVYWIDTMLNKNQHVTDNRHYTVSYG 1050
            .|....|.    |.|.||:     :.|.||......|.:..|.:   |.:.:....:|.   ..|
 Frog   575 TTNISAPTFDYSDLPPPLDETDKTITVLLRPAQGRGSPVSFYQV---LVEGETSPRSRR---ELG 633

  Fly  1051 ITGSNRYRYHNTTDLNCMINDLRPN-TQYEFAVKVVKGRRESSWSMSVLNSTYQNVPVTP---PR 1111
            :.|             |.     |. ..||.|  .::|           :|:|....:.|   ||
 Frog   634 VPG-------------CF-----PGAASYEEA--EIEG-----------SSSYVGAEIPPTDLPR 667

  Fly  1112 EVTVRLDEMNPPTVIVQ-------WIPPKHTLGQITGYNIYYTTDTTKRDRDWSVEAFAGEETML 1169
            :.         |.::..       |.||   |....||.||....:..|.           ||.|
 Frog   668 DT---------PFIVGDNRSYGGYWNPP---LDPRRGYLIYLQAASHHRG-----------ETRL 709

  Fly  1170 MLPNLKPYTTYYFKVQARTTKGANNAPFSALVSYTTSAAVTMQEPDTIAKGIDNEKLLYIIIAAT 1234
            ....:..      |...:.::.::.||               |..|        |..|.:.|.|.
 Frog   710 NCVRIAR------KAPCKDSQRSSMAP---------------QRSD--------EMGLVLGICAG 745

  Fly  1235 AVVLLVVLLGVLLLCRRKPQSSPEHTKKSYQKNNVGVPK 1273
            .:|:.::|||.::|..||.::...:   :|....:|:.|
 Frog   746 GLVVFIILLGAVILIVRKGRTQFSY---AYYPKPIGLTK 781

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845
Ig <180..222 CDD:299845
IG_like 257..340 CDD:214653
IGc2 264..327 CDD:197706
I-set 344..430 CDD:254352
Ig 363..428 CDD:299845
FN3 611..703 CDD:238020 11/57 (19%)
FN3 711..799 CDD:238020 21/101 (21%)
FN3 806..897 CDD:238020 15/92 (16%)
FN3 908..989 CDD:238020 25/104 (24%)
FN3 1011..1097 CDD:238020 15/86 (17%)
FN3 1109..1205 CDD:238020 19/105 (18%)
Neogenin_C 1273..1521 CDD:284094 1/1 (100%)
ptpruXP_012812827.1 MAM 27..183 CDD:366209
IG_like 192..278 CDD:214653 10/56 (18%)
fn3 287..366 CDD:365830 21/93 (23%)
fn3 490..568 CDD:365830 21/77 (27%)
PTP_DSP_cys 931..1141 CDD:391942
PTP_DSP_cys 1227..1431 CDD:391942
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.