DRSC/TRiP Functional Genomics Resources

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Protein Alignment fra and SUSD1

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:XP_011517217.1 Gene:SUSD1 / 64420 HGNCID:25413 Length:770 Species:Homo sapiens


Alignment Length:544 Identity:109/544 - (20%)
Similarity:183/544 - (33%) Gaps:193/544 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   628 TLSWVEPLQNAGDVVYYT---VYYKMNNSEREQKM------------VTKSHDDQQVNIQ----- 672
            ||:..|.|....||..:.   |.:::|:.....|:            ..:|..::.||:.     
Human   291 TLTCTEILTKINDVSLFNDTCVRWQINSRRINPKISYVISIKGQRLDPMESVREETVNLTTDSRT 355

  Fly   673 -----SLLPGRTYQFRVEANTNFGSGASSAPLEVSTQPEV---NIAGPPRNFEGYARSHKEIYVK 729
                 :|.||          ||:....|:||...| .|.|   ..|| .||..|.....||:.:.
Human   356 PEVCLALYPG----------TNYTVNISTAPPRRS-MPAVIGFQTAG-SRNSHGRNTHIKEVDLL 408

  Fly   730 WEEP----TVTNGEILK-------------YRV------YYSENDSGADLYHDST--ALEAVLTE 769
            .::.    ::.|...||             |:.      :|..|.|.|..::.:|  .:..|..:
Human   409 EDDGSFNISIFNETCLKLNRRSRKVGSEHMYQFTVLGQRWYLANFSHATSFNFTTREQVPVVCLD 473

  Fly   770 LRPHTDYVISVVPFNRNGMGDSSAEIRVKTFSSTPSEPPNNVTLEVTSSSSITVHWEPPAEEDRN 834
            |.|.|||.::|                      |....|...::::|.::       |||.:...
Human   474 LYPTTDYTVNV----------------------TLLRSPKRHSVQITIAT-------PPAVKQTI 509

  Fly   835 GQITGYK---IRYRKFKDAPQVKSTPANIRYFELSNLDRNAEYQVKIA-AMTVNGSG-------- 887
            ..|:|:.   :|:|..|        .|::....|.::.....||.:.| .||.|.|.        
Human   510 SNISGFNETCLRWRSIK--------TADMEEMYLFHIWGQRWYQKEFAQEMTFNISSSSRDPEVC 566

  Fly   888 ----PFTEWN-RANTLENDLD-----ETQVPGKPIWISIHPGANNIALHWGPPQHPEIKIRNYVL 942
                |.|.:| ....|.::|.     .||:...|:     |......:|.||  .|.:::|    
Human   567 LDLRPGTNYNVSLRALSSELPVVISLTTQITEPPL-----PEVEFFTVHRGP--LPRLRLR---- 620

  Fly   943 GWGRGIPDENTIELKETERYHILKN--LESNMDYVVSLRARNV---KGDG-PPIYDNIKTRD--- 998
                        :.||       ||  :.|....|:.|..::.   ..:| ...:.|....|   
Human   621 ------------KAKE-------KNGPISSYQVLVLPLALQSTFSCDSEGASSFFSNASDADGYV 666

  Fly   999 -------EEPVDAPTPLEVPVGLRAITMSSSSIVVYWIDTMLNKNQHVTDNRHYTVSYGITGS-N 1055
                   :.|.||   :|:|:|.|          :|:.:..   |..:.....|.:...||.. |
Human   667 AAELLAKDVPDDA---MEIPIGDR----------LYYGEYY---NAPLKRGSDYCIILRITSEWN 715

  Fly  1056 RYRYHN------TTDLNCMINDLR 1073
            :.|.|:      ..::.|..|.||
Human   716 KVRRHSCAVWAQVKEIPCNCNFLR 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845
Ig <180..222 CDD:299845
IG_like 257..340 CDD:214653
IGc2 264..327 CDD:197706
I-set 344..430 CDD:254352
Ig 363..428 CDD:299845
FN3 611..703 CDD:238020 20/99 (20%)
FN3 711..799 CDD:238020 22/112 (20%)
FN3 806..897 CDD:238020 22/107 (21%)
FN3 908..989 CDD:238020 15/86 (17%)
FN3 1011..1097 CDD:238020 15/70 (21%)
FN3 1109..1205 CDD:238020
Neogenin_C 1273..1521 CDD:284094
SUSD1XP_011517217.1 EGF_3 42..69 CDD:289699
EGF_CA 73..111 CDD:214542
EGF_CA 125..>156 CDD:214542
CCP 179..235 CDD:153056
CCP 239..294 CDD:153056 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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