DRSC/TRiP Functional Genomics Resources

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Protein Alignment fra and Susd1

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_001156760.2 Gene:Susd1 / 634731 MGIID:3651543 Length:752 Species:Mus musculus


Alignment Length:545 Identity:99/545 - (18%)
Similarity:177/545 - (32%) Gaps:175/545 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   746 YYSENDSGADLYH---DSTALEAVLTELRPHT--DYVISVVPFNRNGMGDSSAEIRVKTFSSTPS 805
            |.::|  |.:.:|   |:|:...:...:.|..  .||:........|....|.:   :.|.|...
Mouse   161 YVAKN--GPEPFHPRTDATSCTEIDCGIPPEVPEGYVVGSYSSTLGGQAHYSCK---EGFLSVSG 220

  Fly   806 EPPNNVTLEVTSSSSITVHWEPPA----------------------EEDRNGQITGYKIRYRKFK 848
            :       .::..:::.| ||||.                      ...|.|.:..|        
Mouse   221 D-------RISRCTALGV-WEPPKLHCQEISCGSPPEIQNAILVGNHSSRQGSVAHY-------- 269

  Fly   849 DAPQVKSTPANIRYFELSNLDRNAEYQVKIAAMTVNGSGPFTEWNRANTLENDLDETQVPGKPIW 913
            |..:...:|..                 ||.::... .|.::|...|.|             .|.
Mouse   270 DCQEGFESPGG-----------------KITSVCTE-KGAWSEITYACT-------------EIM 303

  Fly   914 ISIHPGA--NNIALHWG-PPQHPEIKIRNYVLGWGRGIPD------ENTIELKETERY-HILKNL 968
            |.||...  |:..:.|. .|:....:| .|::...|..||      |.|:.:....|. .:..:|
Mouse   304 IEIHDVLVFNDTCVRWQISPERVNARI-VYLIRVERQQPDAAESVYEETVNVTTDSRTPEVCLHL 367

  Fly   969 ESNMDYVVSLRARNVKGDGPPIYDNIKTRDEEPVDAPTPLEVPVGLRAITMSSSSIVVYWIDTML 1033
            :...:|.:|:.|...:...|.|. ..:|.:::.::..       ||..|::.:.:.:     |:.
Mouse   368 QQGTNYTISISAAPPRRSVPAIL-GFQTPEDDLLEDD-------GLFNISVFNETCL-----TLS 419

  Fly  1034 NKNQHVTDNRHYTVSYGITGSNRY---RYH----NTTDLN-----CMINDLRPNTQYEFAVKVVK 1086
            ..::.|...:.|.|.  :.|...|   .||    |.|..:     |:  ||.|.|.|...:.:::
Mouse   420 RHSRQVGSEQMYQVE--VLGQRWYLESSYHAALFNFTTRDRAPEVCL--DLYPATDYTINITLLR 480

  Fly  1087 GRRESSWSMSVLNSTYQNVPVTPPREVTVRLDEMNPPTVIVQWIPPKHTLGQITGYNIYYTTDTT 1151
                                .|.||...:         .|...:..|.|:..|:.||     ||.
Mouse   481 --------------------PTEPRSAQI---------TITTSVTAKQTIANISVYN-----DTC 511

  Fly  1152 KRDRDWSVEAFAGEETMLMLPNLKPYTTYYFKVQARTTKGANNAPFSALVSYTTSAAVTMQEPD- 1215
            .|   ||           .|........|.|.:..:  :....|....:|..|||::   |:|: 
Mouse   512 LR---WS-----------SLKTADVLEMYLFHIWGQ--RWYQKAFVQEMVFNTTSSS---QDPEI 557

  Fly  1216 --TIAKGIDNEKLLYIIIAATAVVL 1238
              .:.:|......|..:.:|..||:
Mouse   558 CLDLHQGTSYNVSLQALSSALPVVI 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845
Ig <180..222 CDD:299845
IG_like 257..340 CDD:214653
IGc2 264..327 CDD:197706
I-set 344..430 CDD:254352
Ig 363..428 CDD:299845
FN3 611..703 CDD:238020
FN3 711..799 CDD:238020 11/57 (19%)
FN3 806..897 CDD:238020 15/112 (13%)
FN3 908..989 CDD:238020 19/90 (21%)
FN3 1011..1097 CDD:238020 19/97 (20%)
FN3 1109..1205 CDD:238020 18/95 (19%)
Neogenin_C 1273..1521 CDD:284094
Susd1NP_001156760.2 EGF_3 47..74 CDD:289699
EGF_CA 78..116 CDD:214542
EGF_CA 130..>161 CDD:214542 99/545 (18%)
CCP 184..240 CDD:153056 12/66 (18%)
CCP 244..299 CDD:153056 9/80 (11%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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