DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fra and myom1a

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_001154812.1 Gene:myom1a / 558671 ZFINID:ZDB-GENE-030131-2856 Length:1483 Species:Danio rerio


Alignment Length:1510 Identity:290/1510 - (19%)
Similarity:488/1510 - (32%) Gaps:531/1510 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 LVAIVRQPDL-NQDFLETYLLPGQTAYFRCMLGEANWQEGVKHSVQWLKDDLPLPLDKLRMVVLP 200
            :|.:.|...| .||.:||                   ||.||.             :.:..||:.
Zfish    81 VVPVFRSSHLATQDLMET-------------------QEEVKE-------------EGVGYVVMR 113

  Fly   201 NGALEIDEVGPSDRGSYQCNVTS--GSSSRLSSKTNLNIK----KPSDPGAENSVAPSFLVGPSP 259
            |  |...|.|...|...:...||  .|:.|::....|:.|    |..:|.:... .|.|:|.|..
Zfish   114 N--LFARESGFKMRTVKKTRETSMRESAERMALSQKLHEKEQFQKKMNPDSLTH-PPEFIVKPRG 175

  Fly   260 KTVREGDTVTLDCVANGVPKPQIKWLRNGMDLDFNDLDSRF---SIVGTGSLQISSAEDIDSGNY 321
            :||.||.:|||.|...|.|||::.|.:|.:.:|......::   |.....||:|.:....|:..|
Zfish   176 QTVWEGKSVTLHCTVAGWPKPRVAWYKNNVLIDAKARPEKYFTESQYNMHSLEIKNCTFSDTAEY 240

  Fly   322 QCRASNTVDSLDAQATV---QVQEPPKFIKAPK----------DTT---------AHEKDEPELK 364
            :..|.|......|.|.|   :.:|..:.::.|.          :||         ..|.:...|.
Zfish   241 RISALNVKGESSAFAPVIIKRFKEEEELVERPHGYSPEYGVTFNTTIIDKFDVSFGREGETMSLG 305

  Fly   365 CDIWGKP-----KPVIRWLKNGDLITPNDYMQLVDGH------NLKILGLLNSDAGMFQC-VGTN 417
            |.:...|     :|.|.|.:||..::.:.::.:   |      .|.::.|...|.|::.. |.|.
Zfish   306 CTVIVYPTVKRYQPEIVWYRNGVALSSSKWVHM---HWSGEKATLTLVHLNKEDEGLYTLRVNTK 367

  Fly   418 AAGSVHAA----ARLRVVPQGVKIKKRKSQGHSTKS---LQTFDNLTKRRKPFNSGEQLRTKSGG 475
            :....|:|    ....|..:||.:.....:.|....   :.|:      ::|...|....|   |
Zfish   368 SGFDTHSAYVFVRDADVEEEGVPVAPLDVRCHDANKDYVVVTW------KQPAVEGSSAIT---G 423

  Fly   476 SFPFPDEDDDLD--------DNDSGTTRLRIP-SGKLPKFEQPLNDRRFNILNAGSALPLDNQSK 531
            .|     .|.|:        .||:.....|.| :|.:.........|..|  |||.:.|      
Zfish   424 YF-----IDRLEVGNHHWTQCNDTPVKYARFPVTGLIEGRSYMFRVRALN--NAGVSRP------ 475

  Fly   532 SYEDDDDDYDEDDPAKEALLEAYKQGEDAHKILDSWQQSKSKKSQQQKQSPASP-----DSPEQD 591
              ....|.....||:..|.|.|                           .|::|     ...|:|
Zfish   476 --SRVSDPVVAMDPSDRARLRA---------------------------GPSAPWTGVIKFTEED 511

  Fly   592 PSVPHPGGKPLDSGLQARLPSQPRDLVAQIVKSRFVTLSWVEPLQNAGDVVYYTVYYKMNNSERE 656
            |:|          |:   :|..|.||........:|.|||..|:|...:.|.|.|          
Zfish   512 PTV----------GV---IPGPPTDLAVTEATKSYVVLSWKPPVQRGHEGVMYYV---------- 553

  Fly   657 QKMVTKSHDDQQVN-----------IQSLLPGRTYQFRVEANTNFG-------SGAS-------- 695
            :|.:..:...|:||           :..|...::|.|||.:..:.|       :||:        
Zfish   554 EKCLVGTDAWQRVNTGIPVKSPRFALFDLAEDKSYTFRVRSCNSAGVGEPSEETGATTVGDRLDL 618

  Fly   696 -SAP------------------------------LEVSTQ------------------------- 704
             |||                              :||:..                         
Zfish   619 PSAPGPVIPIRNTDSSVVVCWGASKEVKDLVGYYIEVTVDGSGVWAPCNNKPVKGTRFVCHGLNA 683

  Fly   705 --------PEVNIAG---------------------PPRNFEGYARSHKEIYVKWEEPTVTNGEI 740
                    ..||.||                     ||.......|....:.:.|:.|..|.|..
Zfish   684 TDKCTFRVKAVNAAGYSGSSAESEACLVKASIAVPSPPTGVTTLERLRDYMVIGWQAPAKTGGAD 748

  Fly   741 LK--YRVYYSENDSGADLYHDSTALEAV------LTELRPHTDYVISVVPFNRNGMGDSS---AE 794
            ::  |..|.:..|.....:|:.. |:||      :|:|:.:..|...|..||:.|:.::|   |.
Zfish   749 IRGYYLDYRTVKDGVTSKWHELN-LKAVTSSPYKVTDLKENEFYQFQVRAFNQAGISEASIPTAP 812

  Fly   795 IRVKTFSSTPSEPPNNVTLEVTSSSSITVHWEPPAEEDRNGQITGYKIRYRKFKD------APQV 853
            :..|.::.....||:.:.::.....|:.|.||||....|: .:|||   |..||:      ..|.
Zfish   813 LECKEWTVAVPGPPHGLRVQEVRKDSMVVLWEPPTFNGRS-PVTGY---YVDFKEENGRWRCVQE 873

  Fly   854 KSTPANIRYFELSNLDRNAEYQVKIAAMTVNGSGPFTEWNRANTLENDLDETQVPGK---PIWIS 915
            :||...  |.::|.|.....|:::|.|..:.|.|                   ||.|   .|...
Zfish   874 RSTKHT--YMKVSGLQEGISYRLRIHAKNLAGVG-------------------VPSKATDAILAE 917

  Fly   916 IHPGANNIALHWGPPQHPEIKIRNYVLGWGRGIPDENTI-------ELKETERYHILKNLESNMD 973
            ..||.|.|.:                     .:.|...|       :|||..::...||.|:..|
Zfish   918 TRPGTNEIVV---------------------DVDDNGVISLIFECSDLKEDSQFVWSKNYEAFTD 961

  Fly   974 ------YVVSLRARNVKGDGPPIYDNI----------------KTRDEEP----VDAPTPLEVPV 1012
                  .....::|.:..|  |..|::                .|..||.    :|.....:.|:
Zfish   962 SSRLTIQTTGGKSRAIFND--PSLDDLGIYSCVVTNTDGVSASYTLTEEGLKRLLDISHDHQFPI 1024

  Fly  1013 ----GLRAITMSSSSIVVYW-----------IDTMLNKNQHVTDNRHYTVSYGITGSNRYRYHNT 1062
                ...||.:.....|.:|           ::.:.|.|. :.:.:.||::          ::.:
Zfish  1025 IPFKSEMAIELQEKGRVRFWAEVGKFTSNLQVEYVFNDNV-IHEGKKYTMN----------FNKS 1078

  Fly  1063 TDLNCMINDLRPNT-QYEFAVKVVKGRRESSWSMSVLNSTYQNVPVTPPREVTVRLDEMNPPTVI 1126
            |.:..|..||...| :..|...:|.|:.....|:.::...:..:......|             .
Zfish  1079 TGIIEMFMDLLEVTDEGTFTFNLVDGKATGRTSLVLIGEEFAELQKKSEFE-------------R 1130

  Fly  1127 VQWIPPKHTLGQITGYNIYYTTDTTKRDRDWSVEAFAGEET-------MLMLPNLKPYTTY-YFK 1183
            .:|:                     :|.....||..:.|.|       ...:.|:||.|.. :||
Zfish  1131 AEWV---------------------RRQGPHFVEYLSFEVTPECDVHLKCKVGNIKPATEIAWFK 1174

  Fly  1184 VQARTTKGANNAPFSALVSYTTSAAVTMQEPDTIAK--GIDNEKLLYIIIAATAVVLLVVLLGVL 1246
                                   ..:.::|.|..||  |..:|.|.:.|             |.|
Zfish  1175 -----------------------DGIEIEEDDEDAKKIGKSDEVLTFDI-------------GKL 1203

  Fly  1247 LL------CRRKPQSSPEHTKKSYQKNNVGVPKPPDLWIHHDQMELKN---IDKGLHTVTPVCSD 1302
            ::      .::||.:....:|....|.:.||          .:::||:   .||.|..:|    |
Zfish  1204 VIKSEKAERKKKPATEESPSKPKISKKDAGV----------YEVKLKDERGKDKTLLNLT----D 1254

  Fly  1303 GASSSGALTLPRSVVHSEYEVETPVPGHVTNSLDKRSYVPGYMTTSMNGTMERPQYPRTQYSHQN 1367
            ....:....:.|.:.:|..|::.....|   .:...|:|..|:.....|.:.:    .::.||.:
Zfish  1255 AGYQAVLNEVFRVIANSSTELKVMSTEH---GIILYSFVVHYLEDLRVGWLHK----ESKISHSD 1312

  Fly  1368 RSHMTMEAGLSQQSL 1382
            |    ::.|::.:.|
Zfish  1313 R----VQCGVTGEQL 1323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 1/2 (50%)
Ig <180..222 CDD:299845 7/41 (17%)
IG_like 257..340 CDD:214653 27/88 (31%)
IGc2 264..327 CDD:197706 20/65 (31%)
I-set 344..430 CDD:254352 21/120 (18%)
Ig 363..428 CDD:299845 17/80 (21%)
FN3 611..703 CDD:238020 30/148 (20%)
FN3 711..799 CDD:238020 24/119 (20%)
FN3 806..897 CDD:238020 26/96 (27%)
FN3 908..989 CDD:238020 18/96 (19%)
FN3 1011..1097 CDD:238020 18/101 (18%)
FN3 1109..1205 CDD:238020 13/103 (13%)
Neogenin_C 1273..1521 CDD:284094 20/113 (18%)
myom1aNP_001154812.1 I-set 167..259 CDD:254352 30/91 (33%)
Ig 184..255 CDD:143165 20/70 (29%)
IG_like 296..379 CDD:214653 18/85 (21%)
IGc2 298..369 CDD:197706 16/73 (22%)
FN3 390..476 CDD:238020 20/109 (18%)
FN3 518..611 CDD:238020 25/102 (25%)
FN3 619..708 CDD:238020 9/88 (10%)
FN3 718..810 CDD:238020 22/92 (24%)
FN3 823..914 CDD:238020 29/115 (25%)
Ig 936..1008 CDD:299845 12/73 (16%)
Ig 1381..1472 CDD:299845
I-set 1383..1472 CDD:254352
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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