DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fra and fndc1

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:XP_003200760.2 Gene:fndc1 / 557836 ZFINID:ZDB-GENE-041210-332 Length:1645 Species:Danio rerio


Alignment Length:771 Identity:180/771 - (23%)
Similarity:288/771 - (37%) Gaps:203/771 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   807 PPNNVTLEVTSSSSITVHWEPPAEEDRNGQ-ITGYKIRYRKFKDAPQVKSTPANIRYFELSNLDR 870
            ||.||.| .:....:.|.|:||:|.|  || :..|.|.|.|     .:||    :||..:.. ||
Zfish    30 PPRNVKL-TSVDKGLKVTWDPPSELD--GQPVDSYSIGYGK-----SMKS----LRYVTVDK-DR 81

  Fly   871 NAE----------YQVKIAAMTVNG-SGPF--------TEWNRANTLENDLDETQVPGKPI---- 912
            .:|          :.:|::|...:| |.|.        .||.:.:....:......||:.:    
Zfish    82 RSELLEDVEPGVLHFLKMSAENKDGMS
KPVYRAETPGGGEWVKLDGFAVEPFNRSSPGRMVSITS 146

  Fly   913 -WISIHPGANNIAL-HWGPPQ-----HPEIKIRNYVLGWGRGIP----DENTIELKE---TERYH 963
             .|:..|.....|| |...||     .|..:|       || :|    :::.::|.:   .:|..
Zfish   147 SQINPRPPTQRTALGHQRAPQSSSGPEPPHQI-------GR-LPIRPLNKHRVDLSQHQADQRNA 203

  Fly   964 ILKNLESNMDYVVSLRARNVKGDGPPIYDNIKTRDEEPVDAPTPLEVPVGLRAIT---MSSSSIV 1025
            ....|.|...|||||:|...:|...||  |..|..::.:   |..||...:..||   :|..|::
Zfish   204 NKPKLASESVYVVSLQAPRAQGRSAPI--NTATMSKKVI---TESEVVDEVEDITVRVLSPQSVL 263

  Fly  1026 VYWIDTMLNKNQHVT-DNRHYTVSYGITG-SNRYRYHNTTDLNCMINDLRPNTQYEFAVKVVKGR 1088
            :.|:|..:.||:.:. .:|:|.|.|...| |.|:.|.:||....||..|..::.|||::.:.:|.
Zfish   264 ITWVDPPVEKNKEIPGGSRYYRVKYREKGESARWEYKDTTQRRLMIETLSADSMYEFSICISQGN 328

  Fly  1089 RESSWSMSVLNSTYQNVPVTPPREVTVRLDEMNPPTVIVQWIPPKHTLGQITGYNIYYTTDTTKR 1153
            ....||.||...|.::.|..||....|:........|...|.||:.|.|::..|.:.| ....|.
Zfish   329 HMGKWSASVFQRTPESAPSGPPENFEVKPLRGKGTAVTATWDPPEQTNGRLREYILSY-APAMKP 392

  Fly  1154 DRDWSVEAFAGEETMLMLPNLKPYTTYYFKVQARTTKGANNAPFSALVSYTTSAAVTMQEPDTIA 1218
            ....|| .:.|..|...:..|.|...|.||::|...||......:.:||...|:       :|..
Zfish   393 FGAKSV-TYRGTTTSATIDGLTPGDRYIFKIRAVNRKGQGPQTKAIIVSMPASS-------NTHT 449

  Fly  1219 KGIDNEKLLYIIIAATAVVLLVVLLGVLLLCRRKPQSSPEHTKKSYQKNNVGVPKPPDLWIHHDQ 1283
            :.:|:                              |.:.:.|.|:...|.....:|       |:
Zfish   450 RNMDS------------------------------QRTSQSTSKTSSNNESDYQEP-------DE 477

  Fly  1284 MELKNIDKGLHTVTPVCSDGASSSGALTLPRSVVHSEYEVETPVPGHVTNSLDKRSYVPGYMTTS 1348
            ||..|    ..|.|...:.....      |.|...|.:.:.:.|.|.|.|...|.:     :.||
Zfish   478 MEEPN----TQTTTQAPNTNRRR------PLSQTRSYHSIFSSVRGSVRNGGSKSN-----LHTS 527

  Fly  1349 MNGTMERPQYPRTQYSHQNRSHMTMEAGLSQQS-------LTQPQ--SNSMAQTPEHPYGGYDAN 1404
            ...|.:|          ::....|.::.:.:::       .|.|:  :|:..||.||.....|  
Zfish   528 STHTKDR----------EDEEKPTADSPIEEKTGANEATEDTNPERSNNASPQTQEHSKLSPD-- 580

  Fly  1405 FCNAGNAAAGNGCVSTIESSKRGHPLKSFSVPGP-----PPTGGATPVTKHTPAVTIRPQNQSPY 1464
                               :|...|..|..||..     ||.   ||.|.....:       |..
Zfish   581 -------------------TKESKPSNSDIVPKTSEDKRPPW---TPRTSSIVDI-------SRL 616

  Fly  1465 KKPSFSAATPNRLQGGGSVVHSTDEIQRLAPSTSTEELNQEMANLEGLMKDLSAIT 1520
            ::||..:.:.:|::               :..||:..||||.|   ...|||:|::
Zfish   617 RRPSSRSGSRSRMR---------------SEDTSSSSLNQESA---ATRKDLTAVS 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845
Ig <180..222 CDD:299845
IG_like 257..340 CDD:214653
IGc2 264..327 CDD:197706
I-set 344..430 CDD:254352
Ig 363..428 CDD:299845
FN3 611..703 CDD:238020
FN3 711..799 CDD:238020
FN3 806..897 CDD:238020 31/109 (28%)
FN3 908..989 CDD:238020 25/98 (26%)
FN3 1011..1097 CDD:238020 27/90 (30%)
FN3 1109..1205 CDD:238020 26/95 (27%)
Neogenin_C 1273..1521 CDD:284094 53/262 (20%)
fndc1XP_003200760.2 FN3 28..108 CDD:214495 27/90 (30%)
FN3 247..341 CDD:238020 29/93 (31%)
FN3 348..439 CDD:238020 24/92 (26%)
FN3 1408..1500 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4221
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.