DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fra and igdcc3

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:XP_003199017.2 Gene:igdcc3 / 555947 ZFINID:ZDB-GENE-080303-24 Length:773 Species:Danio rerio


Alignment Length:818 Identity:180/818 - (22%)
Similarity:279/818 - (34%) Gaps:253/818 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LIFQLIGSSLASQALSFTLEPQDAVVPEGHSVLLQCAGTASIGRGGKSKSNLPSSVSIRWRGPDG 85
            |:...:|.:..:: |||||||.|.:..:...::|.|           ....:| .:|.:||   .
Zfish    16 LLLAFVGLTCGAE-LSFTLEPSDIIAVQQQPLMLHC-----------QVEGIP-PISTQWR---R 64

  Fly    86 QDLVIVGDTFRTQLKNGSLYISSVE----ENRGLTGAYQCLLTAEGVGSILSRPALVAIVRQPDL 146
            ...::..|.......||||.|:..:    :.....|.|:| :.....|.::||.|.|......|.
Zfish    65 SGALVQEDHNYVMFTNGSLLITHFQKIKTDGSSDEGDYEC-IAQNFFGLVVSRKARVQAATMADF 128

  Fly   147 NQDFLETYLLPGQTAYFRCMLGEANWQEGVKHSV-QWLKDDLPLPLDKLRMVVLPNGALEIDEVG 210
            :..........|....|:|.:      .|:...| .|.:|..|:.....|..:||.|.|:|..|.
Zfish   129 HVQPESVRADVGGVGRFQCQI------HGLPEPVISWERDGRPVDTSDERFTLLPTGVLQITGVR 187

  Fly   211 PSDRGSYQCNVTSGSSSRLSSKTNLNIKKPSDPGAENSV--APSFLVGPSPKTVREGDTVTLDCV 273
            |.|.|.|.|...:.:..:.|:...|.:.     |:::||  .|..||||...|:....|..|:||
Zfish   188 PEDSGVYCCVAHNSAGVKHSAGAQLTVS-----GSQSSVYKEPMILVGPENLTLTVHQTAILECV 247

  Fly   274 ANGVPKPQIKWLRNGMDLDFNDLDSR------FSIVGTGSLQISSAEDIDSGNYQCRAS--NTVD 330
            |.|.|:|.:.|.|         ||.|      ..::|||:|.||......||.|.|.|:  .|..
Zfish   248 ATGYPRPIVSWSR---------LDGRPIGVEGIQVLGTGNLMISDVRVQHSGVYVCAANKPGTRV 303

  Fly   331 SLDAQATVQVQEPPKFIKAPKDTTAHEKDEPELKCDIWGKPKPVIRWLKNGDLITPNDYMQLVDG 395
            ...||..:.||.|.:|::.|:.............|...|:|.|.|.|||||.::.|:.:::|.:.
Zfish   304 RRTAQGLLVVQAPAEFVQPPQSIARPVGTTAIFTCLAQGEPVPQITWLKNGQILEPDGHVKLRNN 368

  Fly   396 HN-LKILGLLNSDAGMFQCVGTNAAGSVHAAARLRVVPQGVKIKKRKSQGHSTKSLQTFDNLTKR 459
            :: |.|.|:...|..::||:..|:|||..|:|||.|:                            
Zfish   369 NSTLTIYGVTQEDEAIYQCIAENSAGSTQASARLTVL---------------------------- 405

  Fly   460 RKPFNSGEQLRTKSGGSFPFPDEDDDLDDNDSGTTRLRIPSGKLPKFEQPLNDRRFNILNAGSAL 524
                                                                             
Zfish   406 ----------------------------------------------------------------- 405

  Fly   525 PLDNQSKSYEDDDDDYDEDDPAKEALLEAYKQGEDAHKILDSWQQSKSKKSQQQKQSPASPDSPE 589
                                                      |...                   
Zfish   406 ------------------------------------------WADG------------------- 409

  Fly   590 QDPSVPHPGGKPLDSGLQARLPSQPRDLVAQIVKSRFVTLSWVEPLQNAGDVVYYTVYYK----- 649
                                ||..|.|:.|..:....:.::|.||.||..|::.|.::.:     
Zfish   410 --------------------LPGMPTDIQADALSPTSIQVTWKEPTQNTQDIIGYVLHIRKTADP 454

  Fly   650 --MNNSEREQKMVTKSHDDQQVNIQSLLPGRTYQFRVEANTNFGSGASSAPLEVSTQPEVNIAGP 712
              |...|...||..     ||| |..|.|..:|.|.|:|.|:.|:..:|.....||..||  ..|
Zfish   455 VEMEYQEAVSKMTL-----QQV-IGDLEPSTSYSFYVKAYTSRGASKASETTVESTLGEV--PAP 511

  Fly   713 PRNFEGYARSHKEIYVKWEEPTVTNGEILKYRVYYSE---NDSGADLYHDSTALEAVLTELRPHT 774
            |..|.... :...|...||..| ..|:...:.:||.:   ......|......::..:|:|.|..
Zfish   512 PALFTKVI-NLTVIQATWEAST-KMGQQEGFNLYYRKVPVPQFTGPLTFPRDVMQYNITQLDPSF 574

  Fly   775 DYVISVVPFNRNGMGD------SSAEIRVKTFSSTPSE 806
            .|.|.::.||::|.|:      |..|...|:..:||.:
Zfish   575 VYEIKILAFNQHGEGNATLRFVSLKEAVEKSVLNTPCD 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 27/107 (25%)
Ig <180..222 CDD:299845 16/42 (38%)
IG_like 257..340 CDD:214653 29/90 (32%)
IGc2 264..327 CDD:197706 24/70 (34%)
I-set 344..430 CDD:254352 28/86 (33%)
Ig 363..428 CDD:299845 24/65 (37%)
FN3 611..703 CDD:238020 28/98 (29%)
FN3 711..799 CDD:238020 22/96 (23%)
FN3 806..897 CDD:238020 0/1 (0%)
FN3 908..989 CDD:238020
FN3 1011..1097 CDD:238020
FN3 1109..1205 CDD:238020
Neogenin_C 1273..1521 CDD:284094
igdcc3XP_003199017.2 Ig1_Neogenin 30..122 CDD:143199 27/107 (25%)
I-set 128..214 CDD:254352 22/91 (24%)
Ig 130..214 CDD:299845 22/89 (25%)
Ig 229..307 CDD:299845 29/86 (34%)
IG_like 231..313 CDD:214653 29/90 (32%)
I-set 318..404 CDD:254352 28/85 (33%)
IGc2 331..394 CDD:197706 19/62 (31%)
FN3 411..504 CDD:238020 28/98 (29%)
fn3 509..589 CDD:278470 19/81 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4221
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR44170
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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