DRSC/TRiP Functional Genomics Resources

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Protein Alignment fra and Igdcc4

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:XP_038937673.1 Gene:Igdcc4 / 363081 RGDID:1310919 Length:1345 Species:Rattus norvegicus


Alignment Length:1581 Identity:351/1581 - (22%)
Similarity:550/1581 - (34%) Gaps:514/1581 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 LSFTLEPQDAVVPEGHSVLLQCA-GTASIGRGGKSKSNLPSSVSIRWRGPDGQDLVIVGDTFRTQ 98
            |...|.|:.|||       |.|. |.|:.|.        |::|:  | ..|| |:|:..|.... 
  Rat   134 LRVVLGPEQAVV-------LDCTLGAAAAGP--------PTTVT--W-SKDG-DVVLERDNLHL- 178

  Fly    99 LKNGSLYISSVEEN------------RGLTGAYQCLLTAEG-VGSILSRPALVAIVRQPDLNQDF 150
            |.||||.:||..|.            :.:.|:|.||  |.| :|.:.|:.|:|.:....|.:...
  Rat   179 LPNGSLRLSSPLEPEDSDDEEALSVWKVIEGSYSCL--AHGPLGVVASQVAVVKLATLEDFSLHP 241

  Fly   151 LETYLLPGQTAYFRCMLGEANWQEGVKHS-VQWLKDDLPLPLDKLRMVVLPNGALEIDEVGPSDR 214
            ....:....||.|.|      ..||:... :.|.||.:.: .::.|::.||||.|:|.:|..||.
  Rat   242 ESQTVEENGTARFEC------HTEGLPAPIITWEKDQVTV-TEEPRLITLPNGVLQILDVQDSDA 299

  Fly   215 GSYQCNVTSGSSSRLSSKTNLNIKKPSDPGAENSVAPSFLVGPSPKTVREGDTVTLDCVANGVPK 279
            |||:|..|:.:..|.|.:..|::.......|........:..|...||..|.:|.|:|||:..|.
  Rat   300 GSYRCVATNSARQRFSQEALLSVALRGSLEATRGQDVVIVAAPENTTVVSGQSVVLECVASADPT 364

  Fly   280 PQIKWLRNGMDLDFNDLDSRFSIVGTGSLQISSAEDIDSGNYQCRAS--NTVDSLDAQATVQVQE 342
            |.:.|:|.    |...:.:...::|..:|.|:||:...||.|.|||:  .|.|...|.|.::|..
  Rat   365 PFVSWVRQ----DGKPISTDVIVLGRTNLLIASAQPRHSGVYVCRANKPRTRDFATAAAELRVLA 425

  Fly   343 PPKFIKAPKDTTAHEKDEPELKCDIWGKPKPVIRWLKNGDLITPNDYMQLVDGHNLKI---LGLL 404
            .|...:||:..:..........|...|:|:|.:.||.:|..:.||..:::..|....:   :|| 
  Rat   426 APAISQAPEALSRTRASTARFVCRASGEPRPTLHWLHDGAPLRPNGRVKVQGGGGSLVITQIGL- 489

  Fly   405 NSDAGMFQCVGTNAAGSVHAAARLRVVPQGVKIKKRKSQGHSTKSLQTFDNLTKRRKPFNSGEQL 469
             .|:|.:|||..|:||:..|||.|.||                                      
  Rat   490 -QDSGYYQCVAENSAGTACAAAPLAVV-------------------------------------- 515

  Fly   470 RTKSGGSFPFPDEDDDLDDNDSGTTRLRIPSGKLPKFEQPLNDRRFNILNAGSALPLDNQSKSYE 534
                                                                             
  Rat   516 ----------------------------------------------------------------- 515

  Fly   535 DDDDDYDEDDPAKEALLEAYKQGEDAHKILDSWQQSKSKKSQQQKQSPASPDSPEQDPSVPHPGG 599
                               .::|                                          
  Rat   516 -------------------VREG------------------------------------------ 519

  Fly   600 KPLDSGLQARLPSQPRDLVAQIVKSRFVTLSWVEPLQNAGDVVYYTVYYK----MNNSEREQKMV 660
                      |||.|..:.|..:.|..|.::|..|..::..::.::::|:    ::|.|      
  Rat   520 ----------LPSAPTRVKATPLSSSAVLVAWERPELHSEQIIGFSLHYQKARGVDNVE------ 568

  Fly   661 TKSHDDQQVNIQSLLPGRTYQFRVEANTNFGSGASSAPLEVSTQPEVNIAGPPRNFEGYARSHKE 725
                               |||.|.                                        
  Rat   569 -------------------YQFAVN---------------------------------------- 574

  Fly   726 IYVKWEEPTVTNGEILKYRVYYSENDSGADLYHDSTALEAVLTELRPHTDYVISVVPFNRNGMGD 790
                                            :|:|.|:  :.:|.|:|||...||.:::.|...
  Rat   575 --------------------------------NDTTELQ--VRDLEPNTDYEFYVVAYSQLGASR 605

  Fly   791 SSAEIRVKTFSSTPSEPPNNVTLEVTSSSSITVHWEPPAEEDRNGQITGYKIRYRKFKDAPQVKS 855
            :|:...|.|....||..| .::|...:.|.|.|.|.|......|||:..|||.|...|: .||.|
  Rat   606 TSSPALVHTLDDVPSAAP-QLSLSSPNPSDIRVAWLPLPSSLSNGQVVKYKIEYGSGKE-DQVFS 668

  Fly   856 T--PANIRYFELSNLDRNAEYQVKIAAMTVNGSGPFTEWNRANTLENDLDETQVPGKPIWISIHP 918
            |  |.|.....|::|..|..|:|:|:|.|..|.|..::|.:..| ....:::.||..|..:.:..
  Rat   669 TEVPGNETQLTLNSLQPNKVYRVRISAGTGAGYGVPSQWMQHRT-PGAHNQSHVPFAPAELKVRA 732

  Fly   919 GANNIALHWGPPQHPEIKIRNYVLGW----------------GRGIP--DENTIELKETERYHIL 965
            ...::.:.|.||.|| .:|..|.|.|                |||..  |...:.||:..:.:.|
  Rat   733 KMESLVVSWQPPPHP-TQISGYKLYWREVGTEEEADGDRPPGGRGDQAWDVGPVRLKKKVKQYEL 796

  Fly   966 KNLESNMDYVVSLRARNVKGDGPPIYDNI-KTRDEEPVDAPTP-LEV-------PVGLRAITMSS 1021
            ..|.....|.|.|.|.|...||   |..: |.:.|:   |||| |.:       |..:.|.:.||
  Rat   797 TQLVPGRLYEVKLVAFNKHEDG---YAAVWKGKTEK---APTPDLPIQRGPPLPPAHVHAESNSS 855

  Fly  1022 SSIVVYWIDTMLNKNQHVTDNR--HYTVSY---GITGSNRYRYHNTTDLNCMINDLRPNTQYEFA 1081
            :||.:.|      |....|..:  :|||.:   |:..::...|:.::..:.:|..|:|.|:||||
  Rat   856 TSIWLRW------KKPDFTTVKIVNYTVRFGPWGLRNASLVTYYTSSGEDILIGGLKPFTKYEFA 914

  Fly  1082 VKVVKGRRESSWSMSVLNSTYQNVPVTPPREVTVRLDEMNPPTVIVQWIPPKHTLGQITGYNIYY 1146
            |:......:..:...|..||..:.|.|||.:  :||..:.|.||.:.|.||....|:|..|.|.|
  Rat   915 VQSHGVDMDGPFGSVVERSTLPDRPSTPPSD--LRLSPLTPSTVRLHWCPPTEPNGEIVEYLILY 977

  Fly  1147 TTDTTKRDRDWSVEAFAGEETMLMLPNLKPYTTYYFKVQARTTKGANNAPFSALVSYTTSAAVTM 1211
            :.:.|:.:..|::....|......:..|:..|.|:||:.|||..|.  .|||.|     ...:|:
  Rat   978 SNNHTQPEHQWTLLTTEGNIFSAEVHGLESDTRYFFKMGARTEVGP--GPFSRL-----QDVITL 1035

  Fly  1212 QEPDTIAKGIDNEKLLYIIIAATAVVLLVVLLGVLLL----C---RRK------PQSSPEHTKKS 1263
            ||  |.:..:|...:..||:.        |.||:|.|    |   ||.      |..|...|..:
  Rat  1036 QE--TFSDSLDVHSVTGIIVG--------VCLGLLCLLACMCAGLRRSSHREALPGLSSTATAGN 1090

  Fly  1264 ---YQKNNVGVPKPPDLWIHHDQMELKNIDKGLHTVTPVCSDGASSSGALTLPRSVVHSEYEVET 1325
               |.:..:|.|..|                ..|.:                 .|:||...:..:
  Rat  1091 PALYSRARLGPPSVP----------------AAHEL-----------------ESLVHPRPQDWS 1122

  Fly  1326 PVPGHVTNSLDKRSYVPGYMTTSMNGTMERPQYPRTQYSHQNRSHMTMEAG------------LS 1378
            |.|..|.:.....|.:.|.::...              .|..|.....:||            |.
  Rat  1123 PPPSDVEDKAKVHSLMGGSVSDCR--------------GHSKRKISWAQAGGPNWAGSWAGCELP 1173

  Fly  1379 QQSLTQPQSNSMAQTPEHPYGG----------YDANFCNAGNAAAGNGCVSTIE---------SS 1424
            |.|..:| :.:.|..|  |.|.          |||...| |.......|.:.:|         |:
  Rat  1174 QGSGPRP-ALTRALLP--PAGTGQTLLLQALVYDAIKSN-GRKKPSPACRNQVEAEVIVHSDFSA 1234

  Fly  1425 KRG---------HPLKSFSVPGPPPTGGATPVTKHTPAVTIRPQNQSPYKKPSFSAATPNRLQGG 1480
            .:|         .|.::......|||.|...:::....:....:...|      :...|.||...
  Rat  1235 SKGCPDLHLQDLEPEEALPAEVLPPTAGVVDLSQGADWLGRELEECQP------ATTGPERLTCL 1293

  Fly  1481 GSVVHSTDEIQRLAPSTSTEE 1501
            .....::.....|.||::.||
  Rat  1294 PEAASASCSCSDLQPSSAVEE 1314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 36/117 (31%)
Ig <180..222 CDD:299845 17/41 (41%)
IG_like 257..340 CDD:214653 29/84 (35%)
IGc2 264..327 CDD:197706 22/64 (34%)
I-set 344..430 CDD:254352 27/88 (31%)
Ig 363..428 CDD:299845 23/67 (34%)
FN3 611..703 CDD:238020 15/95 (16%)
FN3 711..799 CDD:238020 13/87 (15%)
FN3 806..897 CDD:238020 32/92 (35%)
FN3 908..989 CDD:238020 26/98 (27%)
FN3 1011..1097 CDD:238020 23/90 (26%)
FN3 1109..1205 CDD:238020 31/95 (33%)
Neogenin_C 1273..1521 CDD:284094 45/269 (17%)
Igdcc4XP_038937673.1 Ig 131..223 CDD:416386 34/110 (31%)
Ig strand A' 135..138 CDD:409353 0/2 (0%)
Ig strand B 144..154 CDD:409353 5/16 (31%)
Ig strand C 160..165 CDD:409353 2/7 (29%)
Ig strand C' 167..169 CDD:409353 1/2 (50%)
Ig strand D 175..179 CDD:409353 0/4 (0%)
Ig strand E 182..187 CDD:409353 3/4 (75%)
Ig strand F 209..217 CDD:409353 5/9 (56%)
Ig_3 237..308 CDD:404760 23/77 (30%)
Ig strand A' 243..246 CDD:409353 0/2 (0%)
Ig strand B 252..259 CDD:409353 3/12 (25%)
Ig strand C 265..270 CDD:409353 1/4 (25%)
Ig strand C' 272..274 CDD:409353 0/1 (0%)
Ig strand D 280..284 CDD:409353 1/3 (33%)
Ig strand E 287..292 CDD:409353 2/4 (50%)
Ig strand F 300..308 CDD:409353 4/7 (57%)
Ig strand G 316..324 CDD:409353 1/7 (14%)
IG_like 342..423 CDD:214653 29/84 (35%)
Ig strand A' 342..347 CDD:409353 1/4 (25%)
Ig strand B 353..360 CDD:409353 4/6 (67%)
Ig strand C 366..371 CDD:409353 1/4 (25%)
Ig strand C' 373..375 CDD:409353 1/1 (100%)
Ig strand D 381..384 CDD:409353 0/2 (0%)
Ig strand E 387..393 CDD:409353 2/5 (40%)
Ig strand F 400..407 CDD:409353 4/6 (67%)
Ig 442..514 CDD:416386 24/73 (33%)
Ig strand B 443..451 CDD:409353 1/7 (14%)
Ig strand C 457..462 CDD:409353 1/4 (25%)
Ig strand C' 464..467 CDD:409353 1/2 (50%)
Ig strand D 472..476 CDD:409353 0/3 (0%)
Ig strand E 478..485 CDD:409353 1/6 (17%)
Ig strand F 494..501 CDD:409353 3/6 (50%)
Ig strand G 505..514 CDD:409353 4/8 (50%)
fn3 522..607 CDD:394996 25/183 (14%)
FN3 619..712 CDD:238020 34/94 (36%)
fn3 724..818 CDD:394996 23/94 (24%)
FN3 842..934 CDD:238020 24/97 (25%)
FN3 942..1034 CDD:238020 31/100 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR44170
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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