DRSC/TRiP Functional Genomics Resources

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Protein Alignment fra and Lar

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster


Alignment Length:1165 Identity:271/1165 - (23%)
Similarity:467/1165 - (40%) Gaps:205/1165 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 SRPALV------AIVRQPDLNQDFLETYLLPGQTAYFRCML-GEANWQEGVKHSVQWLKDDLPLP 190
            :.|.:|      .|:|:|. ||.     :..|..|.|.|.. |:.      ..|:.|.|:...:.
  Fly    25 THPTIVDAAHPPEIIRKPQ-NQG-----VRVGGVASFYCAARGDP------PPSIVWRKNGKKVS 77

  Fly   191 LDKLRMVVLPN-GALEIDEVGP----SDRGSYQCNVTSGSSSRLSSKTNLNI----KKPSDPGAE 246
            ..:.|..||.. |.:.|..:.|    .|...|:|...:|....:|:...|.|    |.|:.    
  Fly    78 GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAG---- 138

  Fly   247 NSVAPSFLVGPSPKTVREGDTVTLDCVANGVPKPQIKWLRNGMDLDFNDLDSRFSIVGTGSLQIS 311
               .|....||..:.:..|.||.:.|.|.|.|.|.|.|::|...:|.:  :.|:|: ..|.|||.
  Fly   139 ---FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS--NPRYSL-KDGFLQIE 197

  Fly   312 SAEDIDSGNYQCRASNTVDSLDAQAT---VQVQE-PPKFIKAPKDTTAHE---KDEPELKCDIWG 369
            ::.:.|.|.|:|.|.|::.:..::||   |:|:. ||.|.:.|:  |..|   .....|.|...|
  Fly   198 NSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVPPTFSRPPE--TISEVMLGSNLNLSCIAVG 260

  Fly   370 KPKPVIRWLKNGDLITPNDYMQLVDGHNLKILGLLN-SDAGMFQCVGTNAAGSVHAAARLRV--- 430
            .|.|.::|:|..:.:||.:.|.:  |.|  :|.|:| .::..:.|:..:..|.:.:.:.::|   
  Fly   261 SPMPHVKWMKGSEDLTPENEMPI--GRN--VLQLINIQESANYTCIAASTLGQIDSVSVVKVQSL 321

  Fly   431 --VPQGVKIKKRKSQG----HSTKSLQTFDNLTKRRKPFNSGEQLRTKSGGSFPFPDEDDDLDDN 489
              .|..|:|.:..:..    .|.|..:.......:.||.|:.:.....||               
  Fly   322 PTAPTDVQISEVTATSVRLEWSYKGPEDLQYYVIQYKPKNANQAFSEISG--------------- 371

  Fly   490 DSGTTRLRIPSGKLPKFEQPLNDRRFNIL---NAGSALPLDNQSKSYEDDDDDYDEDDPAKE-AL 550
                   .|....:.:...|..:..|.::   |.|...|    |........|:.......| |.
  Fly   372 -------IITMYYVVRALSPYTEYEFYVIAVNNIGRGPP----SAPATCTTGDFSFGGTKMESAP 425

  Fly   551 LEAYKQGEDAHKILDSWQQSKSKKSQ----------QQKQSPASPDSPEQDPS--------VPHP 597
            .....:...:..::.:|:..::...|          ...|..||.:|...|.|        .||.
  Fly   426 RNVQVRTLSSSTMVITWEPPETPNGQVTGYKVYYTTNSNQPEASWNSQMVDNSELTTVSELTPHA 490

  Fly   598 ------------GGKPLDSGLQAR----LPSQPRDLVAQIVKSRFVTLSWVEPLQNAGDVVYYTV 646
                        |..|:.:.:|.:    :||||.:..|..:....|||.|.:|..::.::|:|.:
  Fly   491 IYTVRVQAYTSMGAGPMSTPVQVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTHSSENIVHYEL 555

  Fly   647 YYKMNNSEREQKMVTKSHDDQQVNIQSLLPGRTYQFRVEANTNFGSGASSAPLEVSTQPEVNIAG 711
            |:  |::...|....:..:.:...:..|.|...|...:.|.:..|.||::.|:.|.|:   ....
  Fly   556 YW--NDTYANQAHHKRISNSEAYTLDGLYPDTLYYIWLAARSQRGEGATTPPIPVRTK---QYGA 615

  Fly   712 PPRNFEGYARSHKEIYVKWEEPTV--TNGEILKYRVYY----SENDSGADLYHDSTALEAVLTEL 770
            ||||....|.|...|.:.|..|.|  :||.|:.|:|::    .|:|....:..:.|::  ||.||
  Fly   616 PPRNITAIATSSTTISLSWLPPPVERSNGRIIYYKVFFVEVGREDDEATTMTLNMTSI--VLDEL 678

  Fly   771 RPHTDYVISVVPFNRNGMGDSSAEIRVKTFSSTPSEPPNNVTLEVTSSSSITVHWEPPAEEDRNG 835
            :..|:|.|.|:.....|.|..|..|.::|....|.: |.:|.....:|:||.|.|:||.|:||||
  Fly   679 KRWTEYKIWVLAGTSVGDGPRSHPIILRTQEDVPGD-PQDVKATPLNSTSIHVSWKPPLEKDRNG 742

  Fly   836 QITGYKIRYRKFKDAPQ------VKSTPANIRYFELSNLDRNAEYQVKIAAMTVNGSGPFTEWNR 894
            .|.||.|..::.:|..:      .|....:...|.::.|..:.:|.:::||:|..|.|       
  Fly   743 IIRGYHIHAQELRDEGKGFLNEPFKFDVVDTLEFNVTGLQPDTKYSIQVAALTRKGDG------- 800

  Fly   895 ANTLENDLDETQVPGKPIWISIHPGAN----------NIALHWGPPQHPEIKIRNYVLGWGRGIP 949
                  |.....|...|..:.:.|..:          :|.|.|..|.....::|.|.|.|  |:.
  Fly   801 ------DRSAAIVVKTPGGVPVRPTVSLKIMEREPIVSIELEWERPAQTYGELRGYRLRW--GVK 857

  Fly   950 DENTIELKE---------TERYHILKNLESNMDYVVSLRARNVKGDGPPIYDNIKTRDEEPVDAP 1005
            |:   .|||         .:|:   .|||..::|...:...|..|.|.......:|.:..|...|
  Fly   858 DQ---ALKEEMLSGPQMTKKRF---DNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEGTPGGPP 916

  Fly  1006 TPLEVPVGLRAITMSSSSIVVYW-IDTMLNKNQHVTD---NRHYTVSYGITGSNRYRYHNTTDLN 1066
            :.:.:..      .:...:.|.| ..|..::|..:|.   ..|..:.:|: ||.|    |.|...
  Fly   917 SNITIRF------QTPDVLCVTWDPPTREHRNGIITRYDVQFHKKIDHGL-GSER----NMTLRK 970

  Fly  1067 CMINDLRPNTQYEFAVKVVKGRRESSWSMSVLNSTYQNVPVTPPREVTVRLDEMNPPTVIVQWIP 1131
            .:..:|..||:|.|.|:....:....:|..::..|.:::...|   ::::.:..:..|..:.| .
  Fly   971 AVFTNLEENTEYIFRVRAYTKQGAGPFSDKLIVETERDMGRAP---MSLQAEATSEQTAEIWW-E 1031

  Fly  1132 PKHTLGQITGYNIYYTTDTTKRDRDWSVEAFAGEETMLMLPNLKPYTTYYFKVQARTTKG 1191
            |..:.|::.||.|:||....:...||..:. .|......|.||:.:..|...:.||...|
  Fly  1032 PVTSRGKLLGYKIFYTMTAVEDLDDWQTKT-VGLTESADLVNLEKFAQYAVAIAARFKNG 1090

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 2/12 (17%)
Ig <180..222 CDD:299845 11/46 (24%)
IG_like 257..340 CDD:214653 28/85 (33%)
IGc2 264..327 CDD:197706 23/62 (37%)
I-set 344..430 CDD:254352 22/89 (25%)
Ig 363..428 CDD:299845 17/65 (26%)
FN3 611..703 CDD:238020 24/91 (26%)
FN3 711..799 CDD:238020 30/93 (32%)
FN3 806..897 CDD:238020 28/96 (29%)
FN3 908..989 CDD:238020 23/99 (23%)
FN3 1011..1097 CDD:238020 19/89 (21%)
FN3 1109..1205 CDD:238020 20/83 (24%)
Neogenin_C 1273..1521 CDD:284094
LarNP_001260594.1 Ig 35..129 CDD:299845 25/105 (24%)
I-set 36..129 CDD:254352 25/104 (24%)
IG_like 146..227 CDD:214653 27/83 (33%)
Ig 159..228 CDD:299845 23/71 (32%)
I-set 234..318 CDD:254352 22/89 (25%)
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216 17/71 (24%)
fn3 324..404 CDD:278470 16/105 (15%)
FN3 423..514 CDD:238020 14/90 (16%)
FN3 520..610 CDD:238020 24/91 (26%)
FN3 616..707 CDD:238020 30/92 (33%)
FN3 712..810 CDD:238020 31/111 (28%)
FN3 832..907 CDD:238020 21/82 (26%)
FN3 914..1005 CDD:238020 20/101 (20%)
FN3 1012..1101 CDD:238020 20/84 (24%)
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550
PTPc 1503..1731 CDD:238006
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 42 1.000 Domainoid score I8445
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

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