DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fra and ihog

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_609085.1 Gene:ihog / 33972 FlyBaseID:FBgn0031872 Length:886 Species:Drosophila melanogaster


Alignment Length:1222 Identity:233/1222 - (19%)
Similarity:383/1222 - (31%) Gaps:469/1222 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LLSSCLIFQLIGSSL------------------------------ASQALSFTLEPQDAVVPEGH 50
            |.||.|:|.|:.|.|                              .|..:.....|:..|.|.|.
  Fly     4 LTSSLLLFSLLTSRLEAIPVLEKSPAHPAHSAHPAHPAHPAHPAHPSPGVRILRAPESLVAPLGD 68

  Fly    51 SVLLQC-------------AGTASIGRG------GKSKSNLPSSVSIR----------------- 79
            .|:|:|             ..:.|.|.|      |.:|:|:....:|.                 
  Fly    69 EVVLECETSLQPERFEWSHRSSRSPGAGFKYLKTGTAKANVSQEAAISRLRVLVRPDTLGEYRCV 133

  Fly    80 -WRGPDGQDLVIVGDTFRTQLKNGSLYISSVEENRGLTGAYQCLLTAEGVGSILSRPALVAIVRQ 143
             |.||    ||:.....|.:|.:.||..:...|:.                              
  Fly   134 GWFGP----LVVTSTIARLELASTSLVDAQESESP------------------------------ 164

  Fly   144 PDLNQDFLETYLLPGQTAYFRCMLGE-------ANW---QEGVKHSVQWLKDDLPLPLDKLRMVV 198
                   |:..:..|.:..:.|  |:       |:|   :.||:...:::.              
  Fly   165 -------LQWRVSAGNSVLWSC--GQQVQSNPSASWSYYRNGVEIKPEFIG-------------- 206

  Fly   199 LPNGALEIDEVGPSDRGSYQCNVTS-GSSSRLSSKTNLNIKKPSDPGAENSVAPSFLVG-PSPK- 260
             .||.|.:..|.....|||.|..|: .|..|:....:|.::...:..:| |.:|..|.| ||.: 
  Fly   207 -TNGNLFLSNVSSESSGSYSCQATNPASGERIQLPGSLQLQVTPEQRSE-SKSPHLLRGQPSSQE 269

  Fly   261 -TVREGDTVTLDCVANGVPKPQIKWLRNGMDLDFNDLDSRFSIVGTGSLQISSAEDIDSGNYQCR 324
             |:|||.::.|.|...|.|.|.:.|  :..|:.....:.|..:.| .:|:||:....|:|.|.|.
  Fly   270 ITIREGSSLLLLCPGVGSPPPTVVW--SSPDVVGAVKNKRSKVFG-HALEISNTRVNDAGTYICF 331

  Fly   325 ASNTV-DSLDAQATVQVQEPPKFIKAPKDTTAHEKDEPELKCDIWGKPKPVIRWLKNGDLITPND 388
            ..|.| .:|:....|.|::||:.::.|.....:|.|..:|:|...|.|.|.|.||.||.....:.
  Fly   332 QDNGVRPALEHYIKVHVEQPPQIVRPPWADLTNEGDRLKLECKATGVPTPEIYWLLNGHSSIDDS 396

  Fly   389 YMQLVDGHNLKIL-GLLNSDAGMFQCVGTNAAGSVHAAARLRVVPQGVKIKKRKSQGHSTKSLQT 452
            ..:|  .:|..|| .:|...||..||...|..|...|...|:|.|:.:: :.|:|.|        
  Fly   397 EAEL--SNNFLILHSVLKRHAGYVQCFARNRLGEHSAGTLLQVNPKQIQ-EPRESGG-------- 450

  Fly   453 FDNLTKRRKPFNSGEQLRTKSGGSFPFPDEDDDLDDNDSGTTRLRIPSGKLPKFEQPLNDRRFNI 517
                |.|.|| |.|                                                   
  Fly   451 ----THRPKP-NQG--------------------------------------------------- 459

  Fly   518 LNAGSALPLDNQSKSYEDDDDDYDEDDPAKEALLEAYKQGEDAHKILDSWQQSKSKKSQQQKQSP 582
                                                                     |:|::..|
  Fly   460 ---------------------------------------------------------SRQKQMYP 467

  Fly   583 ASPDSPEQDPSVPHPGGKPLDSGLQARLPSQPRDLVAQIVKSRFVTLSWVEPLQNAGDVVYYTVY 647
            .:|      |:|             .||..:.            |.|.|:.|..:...:|.:.|.
  Fly   468 PTP------PNV-------------TRLSDES------------VMLRWMVPRNDGLPIVIFKVQ 501

  Fly   648 YKMNNSEREQKMVTKSHDDQQVNIQSLLPGRTYQFRVEANTNFGSGASSAPLEVSTQPEVNIAGP 712
            |         :||.|..:.|..|                        .:.|.           |.
  Fly   502 Y---------RMVGKRKNWQTTN------------------------DNIPY-----------GK 522

  Fly   713 PRNFEGYARSHKEIYVKWEEPTVTNGEILKYRVYYSENDSGADLYHDSTALEAVLTELRPHTDY- 776
            |               ||      |.|:.|                   :..|.:|:|:|...| 
  Fly   523 P---------------KW------NSELGK-------------------SFTASVTDLKPQHTYR 547

  Fly   777 --VISVVPFNRNGMGDSSAEIRVKTFSS-TPSEPPNNVTLEVTSSSSITVHWEPPAEEDRNGQIT 838
              :::|...|.|...::||:..::..:: .|...|..:.:|..|.:::.:||...::.|.: .||
  Fly   548 FRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEH-LIT 611

  Fly   839 GYKIRYRKFKDAPQ-VKST--PANIRYFELSNLDRNAEYQVKIAAMTVNGSGPF----------- 889
            ||...||....|.: .|:|  .|:.|.|:::.|:....|:.|:.:.:...:..|           
  Fly   612 GYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRP 676

  Fly   890 -TEWNRANTLENDLDETQVPGKPIWISIHP--------GA----------------NNIALHWGP 929
             |......||:....:|..|......::.|        ||                .|.......
  Fly   677 KTSTTEEPTLQMGDRDTTTPSHNETFNMSPMLTGTIGGGAVLILLLISTCFCVCRRRNSRSRGNN 741

  Fly   930 PQHPEI-KIRNYVLGWGRGIPDENTIELKETERYHILKNLESNMDYVVSLRARNVKGDGPPIYDN 993
            |..|.: ::|:..:..|...|   |.:.:.|...||..|..:.... .:|..:|......|.|..
  Fly   742 PNKPRMAELRDDFVPLGNCSP---TKQRQRTRHIHITLNPLAQQQQ-QALEEKNDTDQDAPYYQR 802

  Fly   994 IKTRDEEPVDAPTPLEVPVGLRAITMSSSSIVVYWIDTMLNKNQHVTDNRHYTVSYGITGSNRYR 1058
            ..:.|.:|.           ||  .|||||         |.::|...:.     :.|..|||...
  Fly   803 PSSYDYDPT-----------LR--RMSSSS---------LRRSQRTLER-----AGGSNGSNNGN 840

  Fly  1059 YHN---TTDLNCMINDLRPNTQYEFAVKVVKGRRESSWSMSVLNSTYQNVPV 1107
            .:|   :.:...:.|..:|..      .::|..|.||.|.::.:.:..:|.|
  Fly   841 NNNLNQSAEAGSIENPGKPGR------VLMKRPRLSSRSENLSSGSLNSVGV 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 24/140 (17%)
Ig <180..222 CDD:299845 8/41 (20%)
IG_like 257..340 CDD:214653 26/85 (31%)
IGc2 264..327 CDD:197706 18/62 (29%)
I-set 344..430 CDD:254352 27/86 (31%)
Ig 363..428 CDD:299845 22/65 (34%)
FN3 611..703 CDD:238020 13/91 (14%)
FN3 711..799 CDD:238020 17/90 (19%)
FN3 806..897 CDD:238020 23/105 (22%)
FN3 908..989 CDD:238020 17/105 (16%)
FN3 1011..1097 CDD:238020 21/88 (24%)
FN3 1109..1205 CDD:238020
Neogenin_C 1273..1521 CDD:284094
ihogNP_609085.1 IG_like 59..145 CDD:214653 19/89 (21%)
ig 265..330 CDD:278476 21/67 (31%)
IG_like 267..348 CDD:214653 24/83 (29%)
Ig 314..>377 CDD:299845 19/62 (31%)
IG_like 364..437 CDD:214653 25/74 (34%)
IGc2 365..427 CDD:197706 22/63 (35%)
FN3 467..565 CDD:238020 34/212 (16%)
fn3 580..655 CDD:278470 21/75 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR44170
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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