DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fra and boc

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_001005393.1 Gene:boc / 334628 ZFINID:ZDB-GENE-030131-6560 Length:1032 Species:Danio rerio


Alignment Length:897 Identity:235/897 - (26%)
Similarity:361/897 - (40%) Gaps:187/897 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SRTLWNW-----------LLSSC-LIFQLIGSSLASQALS-FTLEPQDAVVPEGHSVLLQCAGTA 60
            |.|| ||           |.|.| |:|.|..|:..:..:. ||.||...|...|.||.|:|    
Zfish     2 SGTL-NWIPWERKRKIRVLCSLCVLLFCLQDSNAVTDDVPVFTEEPFSVVQKLGGSVTLRC---- 61

  Fly    61 SIGRGGKSKSNLPSSVSIRWRGPDGQDLVIVGD-TFRTQLKNGSLYISSVEENRGLT-GAYQCLL 123
                     |.||:.|:|.|. .:|::|...|| .....::.|||||.|:   ..|| |.|||:.
Zfish    62 ---------SALPNHVNISWH-LNGRELPAGGDEELGVLVRPGSLYIPSL---TNLTVGRYQCVA 113

  Fly   124 TAEGVGSILSRPALVAIVR----QPDLNQDFLETYLLPGQTAYFRCMLGEANWQEGVKHSV--QW 182
            |. .|||..|.||.|...:    :||   |..|..:..|.||...|.|.|:..:..|::||  :|
Zfish   114 TT-SVGSCASVPANVTAAKLRDFEPD---DQQEIEVDEGNTAVIECHLPESQPKAQVRYSVKQEW 174

  Fly   183 LKDDLPLPLDKLRMVVLPNGALEIDEVGPSDRGSYQCNVTSGSSSRLSSKTN---LNIKKPSDPG 244
            |:      ..|...:::|:|.|:|......|.|.|.|...:..:..:.:.|:   |.|::     
Zfish   175 LE------TSKGNYLIMPSGNLQIANATRDDEGPYICAAYNPVTQEIKTSTSTDRLRIRR----- 228

  Fly   245 AENSVAPSFLVGPSPKT--VREGDTVTLDCVANGVPKPQIKWLRNGMDLDFNDLDSRFSIVGTGS 307
             ..|.|...:..|:.::  |.:|..:.|:|||:|:|.||:.|.::|:||. |..::||.:   .:
Zfish   229 -STSEAARIIYPPASRSIMVNKGQRLVLECVASGIPTPQVTWAKDGLDLR-NHNNTRFLL---SN 288

  Fly   308 LQISSAEDIDSGNYQCRASNTVDSLDAQAT---VQVQEPPKFIKAPKDTTAHEKDEPELKCDIWG 369
            |.|.:|.:.|||.|.|.|.|.:.|..:...   |||.|||:.....:.......|.....|.:.|
Zfish   289 LLIDAASESDSGTYVCLADNGIGSTSSAQVLYDVQVFEPPQVRVELQQQDVAWGDTVRFSCQVRG 353

  Fly   370 KPKPVIRWLKNGDLITPNDYMQLVDGHNLKILGLLNSDAGMFQCVGTNAAGSVHAAARLRVVPQG 434
            ||.|.:.||.|...::|:. ...|....|::|.:...|.||:||:..|..||..||.||..:|  
Zfish   354 KPAPTVVWLHNAQPLSPSP-RHRVSAQVLRVLNVGPQDDGMYQCMAENGVGSSQAATRLLTLP-- 415

  Fly   435 VKIKKRKSQGHSTKSLQTFDNLTKRRKPFNSGEQLRTKSGGSFPFPDEDDDLDDNDSGTTRLRIP 499
             .:..||..  ..:.|.. |.:.:.:.|...    ...:....||...:..:...::.....:..
Zfish   416 -TVPSRKMP--MIRPLSP-DKVLREQPPLKP----PVSTSAVLPFDCSEVRVSPAEAPVILSQPR 472

  Fly   500 SGKLPKFEQPLNDRRFNILNAGSALPLDNQSKSYEDDDDDYDEDDPAKEALLEAYKQGEDAHKIL 564
            :||...:|.....|                          :|...|..|.:::..|.||..    
Zfish   473 TGKADYYELTWKPR--------------------------HDGGAPVLEYIIKYRKAGESP---- 507

  Fly   565 DSWQQSKSKKSQQQ----KQSPASPDSPEQ---------DPSV----------PHPGGKPLDSGL 606
            ..|..:....||.:    |..|||....|.         .|::          ..|.|.|....:
Zfish   508 GEWTTNTISGSQHKLILTKLQPASLYEVEMAARNCAGLGQPAMMTFRTGKWRRGGPIGPPKTPVV 572

  Fly   607 QARL--PSQP-RDLVAQIVK-SRFVTLSWVEPLQNAGDVVYYTVYYKMNNSEREQKMVTKSHDDQ 667
            |.||  |..| |..|:...: |.:||  |: |..|.|        :.:.:...|.|.:.|...|.
Zfish   573 QPRLSPPEAPDRPTVSMATETSAYVT--WI-PRGNRG--------FPIQSFRVEHKKLRKGSGDW 626

  Fly   668 QVNIQSLLP------------GRTYQFRVEANTNFGSGASSAPLEVSTQPEVNIAGPP--RNFEG 718
            :|.:.::.|            |.:|:|||.|....|:...|||.:..|   |..:|||  |..:|
Zfish   627 EVAVNNIPPSRLSVEVTGLEKGTSYKFRVLAVNVLGASPPSAPSKAYT---VVGSGPPNRRPIDG 688

  Fly   719 YARSHKE------IYVKWEEPTVTNGEILKYRVYYSENDSGADLYHDSTALEA-----VLTELRP 772
            ...::.|      |.:||....:.|..|..:.::|...||..|..:....:|.     .:|:|:|
Zfish   689 PYITYNEAINETTIILKWTYTPLNNTPIYGFYIFYRPTDSDNDSDYKKDVVEGDRYWHSITDLQP 753

  Fly   773 HTDYVISVVPFNRNGMGDSSAEIRV-------------KTFSSTPSEPPNNV 811
            .|.|.|.:..||..|..:....:.:             :|.||.|..|.|.|
Zfish   754 ETAYDIKMQCFNEGGESEFGNVVILETKARPHQRTTPPETASSRPEHPGNPV 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 40/106 (38%)
Ig <180..222 CDD:299845 12/43 (28%)
IG_like 257..340 CDD:214653 30/87 (34%)
IGc2 264..327 CDD:197706 25/62 (40%)
I-set 344..430 CDD:254352 26/85 (31%)
Ig 363..428 CDD:299845 22/64 (34%)
FN3 611..703 CDD:238020 27/105 (26%)
FN3 711..799 CDD:238020 25/113 (22%)
FN3 806..897 CDD:238020 3/6 (50%)
FN3 908..989 CDD:238020
FN3 1011..1097 CDD:238020
FN3 1109..1205 CDD:238020
Neogenin_C 1273..1521 CDD:284094
bocNP_001005393.1 Ig_2 40..128 CDD:290606 39/105 (37%)
IG_like 48..128 CDD:214653 35/97 (36%)
IG_like 140..219 CDD:214653 21/84 (25%)
Ig 148..209 CDD:299845 20/66 (30%)
IG_like 242..315 CDD:214653 28/76 (37%)
Ig 243..316 CDD:299845 28/76 (37%)
I-set 328..411 CDD:254352 24/83 (29%)
IGc2 342..403 CDD:197706 19/61 (31%)
ISET-FN3_linker <422..463 CDD:293231 5/47 (11%)
FN3 480..555 CDD:238020 17/104 (16%)
FN3 579..674 CDD:238020 27/105 (26%)
FN3 695..780 CDD:238020 20/84 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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