DRSC/TRiP Functional Genomics Resources

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Protein Alignment fra and boi

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_001096868.3 Gene:boi / 31229 FlyBaseID:FBgn0040388 Length:1105 Species:Drosophila melanogaster


Alignment Length:1287 Identity:259/1287 - (20%)
Similarity:410/1287 - (31%) Gaps:474/1287 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LLSSCLIFQLIGSSLASQALS----FTLEPQDAVVPEGHSVLLQCAGTASIGRGGKSKSNL-PSS 75
            |:::|:.......|.:|.|.:    |...|:.||.|:|..|:.:|            :.|| |..
  Fly    13 LMTTCIYTLQASDSNSSVATTLGVLFERAPESAVAPKGDEVVFEC------------ELNLKPDR 65

  Fly    76 VSIRW-RGPDGQDLVIVGDTFRTQLKNGS--------LYISSVEENRGLTGAYQCLLTAEGVGSI 131
            :..|: ||...:..:.:..:....:.:||        :|:|:     ...|.||| :...|.|::
  Fly    66 LEWRFRRGDSSEPYLYLRPSAGYNVTSGSDGLAWRLRIYVSA-----QTAGDYQC-VAWYGPGAL 124

  Fly   132 LSRPALVAIVR-QPDLNQ------DFLETYLLPGQTAYFRCMLGEAN----WQEGVKHSVQWLKD 185
            .|.||.:|:|. ..|:.|      ..:...:.|......||....:|    |        .:.::
  Fly   125 ASTPARLALVSIALDVGQGSMGARSSIRWSVAPKNCLLIRCGSVISNPPAIW--------SFYRN 181

  Fly   186 DLPLPLDKLRMVVLPN--GALEIDEVGPSDRGSYQC---NVTSGSSSRLSSKTNLNIKKPSDPGA 245
            ...||..:|    ||.  |||.:|.|...|.|:|.|   |..:|...||.....|.:      ..
  Fly   182 GKKLPQSEL----LPGAAGALVLDTVTAKDAGNYSCVATNSITGDELRLPQTIELRV------DY 236

  Fly   246 ENSVAPSFLVGPSPK-TVREGDTVTLDCVANGVPKPQIKWLRNGMDLDFNDLDSRFSIVGTGSLQ 309
            .:...|.||..|..: :.|.|:||.|:|...|.|:|::.|....:...:|   :|.:|:..| ||
  Fly   237 TDRTPPYFLQRPPIEYSARPGETVVLECPGVGSPRPRVIWSSPNVVEIYN---NRSTILSYG-LQ 297

  Fly   310 ISSAEDIDSGNYQCRASNTV-DSLDAQATVQVQEPPKFIKAPKDTTAHEKDEPELKCDIWGKPKP 373
            |:..:..|.|:|.|...|.: ..:|....:.|.:.|..::.|..|..:|.:...|.|...|.|:|
  Fly   298 ITDVKPEDQGSYICMLDNGIAPPIDHTIKLSVLQRPTILRGPAATLTNESNPLLLDCSASGNPQP 362

  Fly   374 VIRWLKNGDLITPNDYMQLVDGHNLKILGLLNSDAGMFQCVGTNAAGSVHAAARLRVVPQGVKIK 438
            .|.||.||:..| .|...:||..:|::..:....||:.||...|..|.......|||.|      
  Fly   363 DIYWLINGEDAT-KDPEAVVDNRSLQLKRVQKRHAGVVQCFAKNILGETSEGNILRVNP------ 420

  Fly   439 KRKSQGHSTKSLQTFDNLTKRRKPFNSGEQLRTKSGGSFPFPDEDDDLDDNDSGTTRLRIPSGKL 503
                                                  .....|||:             |.|::
  Fly   421 --------------------------------------LEITGEDDE-------------PLGEV 434

  Fly   504 PKFEQPLNDRRFNILNAGSALPLDNQSKSYEDDDDDYDEDDPAKEALLEAYKQGEDAHKILDSWQ 568
            |.:  |:::.     |.|    :...|.|                                   .
  Fly   435 PVW--PVHES-----NTG----MGTSSTS-----------------------------------G 453

  Fly   569 QSKSKKSQQQ-KQSPASPDSPE----QDPSVPHPGGKPLDSGLQARLPSQPRDLVAQIVKSRFVT 628
            .||:|..::: |.|...|..|.    .|.||......|.:||||           ....|.::..
  Fly   454 GSKNKSGRRKFKASMVPPSRPNVTRLSDESVMLRWSVPQNSGLQ-----------ITFFKVQYRM 507

  Fly   629 L--------SWVEPLQNAGDVVYY-----------TVYYKMNNSEREQKM------VTKSHDDQQ 668
            |        :|    |...|.:.|           ..:::..|.:||.:|      .|.|     
  Fly   508 LGDGKNRRKNW----QTTSDNIPYGNAHGSGPGQGNSHWRARNRDREYEMGNPPKNFTSS----- 563

  Fly   669 VNIQSLLPGRTYQFRV----------EANTNF------GSGASSAPLEVSTQPEVNIAGPPRNFE 717
              :..|..|:.|:||:          |.||:.      |:..|:.|:     ||:.        |
  Fly   564 --VTGLTAGKYYRFRIVAVYSNNDNKEGNTSLKFFLQNGTSKSNLPV-----PELR--------E 613

  Fly   718 GYARSHKEIYVKWEEPTVT-NGEILKYRVYYSENDSGADLYHDST-----ALEAVLTELRPHTDY 776
            ....|...:.:.|...:.| |.:|..|..||...||.|: |..:|     :....:..|||.|.|
  Fly   614 VETLSESAVVLHWSLVSSTQNEDIDGYYAYYRPADSAAE-YLKATVDGGMSRSFKIDLLRPGTPY 677

  Fly   777 VISVVPFNRNGMGDSSAEIRVKTFSSTPSEPPNNVTLEVTSSSSITVHW---------------- 825
            ...:..||.:...:.|| ||......|..:|.::....|.::.::..|.                
  Fly   678 EFKLQSFNSDAASEFSA-IRQARTRKTHEQPASSSATPVPANKAVEQHQNSLYPLIAGAAGGGIL 741

  Fly   826 ---------------EPPAEEDRNGQ---------ITGYKI---RYRKFKDA-------PQVKST 856
                           |....||.|..         :|...:   .:.|..|.       |::..|
  Fly   742 LLIASLVVCLCLKRRENSQPEDENKPQLEHIQADFVTSAVLGVGGHHKSGDVRRLNGVIPRMNIT 806

  Fly   857 PANIRYFELSNLDRNAEYQVKIAAMTVNGSG-------------------------------PFT 890
            |..:.....|:.:||. .:::......||:|                               |..
  Fly   807 PNPLAQETASDKNRNV-MELRFLPPLANGNGNGNCMARDLALERSNAEEQQDEDGHEDEKGLPAV 870

  Fly   891 EWNRANTLE----------------NDLDE----TQVPGKPIWISIHP----------GANNI-- 923
            ..:...|||                ..||.    .:.|.||:     |          |.||.  
  Fly   871 ASSSCETLEACDAAIKLNLPQKHDQEQLDAPNAVLEAPSKPL-----PPLPKKPANGAGQNNSGL 930

  Fly   924 ---ALHWGPPQHPEIKIRNYVLGWGRGIPDENTIELKETERYHILKNLESNMDYVVSLRARNVKG 985
               .||...|.||               |...|:             :...:||         ..
  Fly   931 HQNGLHHAQPYHP---------------PGTPTL-------------MHKRLDY---------HQ 958

  Fly   986 DGPPI------YDNIKTRDEEPV------------------DAPTPLEVPVGLRAITMSSSSIVV 1026
            ..||:      |....|....|:                  ..|||..:| .||....:|.    
  Fly   959 QPPPVPPHSAYYQQAPTHQPSPMMERSVRGHQQPGGFHMEEGTPTPTRIP-SLRRQRRTSG---- 1018

  Fly  1027 YWIDTMLNKNQHVTDNRHYTVSYGITGSNRYRYHNTTDLNCMINDLRPNTQY 1078
                     ||.| .|.|..::.|::      :||..:     |:|.|:.|:
  Fly  1019 ---------NQQV-HNSHSNLNIGLS------HHNNNN-----NNLPPHHQH 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 27/117 (23%)
Ig <180..222 CDD:299845 15/46 (33%)
IG_like 257..340 CDD:214653 24/84 (29%)
IGc2 264..327 CDD:197706 20/62 (32%)
I-set 344..430 CDD:254352 26/85 (31%)
Ig 363..428 CDD:299845 21/64 (33%)
FN3 611..703 CDD:238020 23/132 (17%)
FN3 711..799 CDD:238020 25/93 (27%)
FN3 806..897 CDD:238020 20/171 (12%)
FN3 908..989 CDD:238020 16/95 (17%)
FN3 1011..1097 CDD:238020 16/68 (24%)
FN3 1109..1205 CDD:238020
Neogenin_C 1273..1521 CDD:284094
boiNP_001096868.3 IG_like 42..131 CDD:214653 26/106 (25%)
IG_like 154..234 CDD:214653 24/91 (26%)
Ig 172..234 CDD:299845 20/73 (27%)
IG_like 249..329 CDD:214653 23/83 (28%)
Ig 257..329 CDD:299845 22/75 (29%)
IG_like 339..418 CDD:214653 25/79 (32%)
Ig 352..408 CDD:299845 20/56 (36%)
FN3 470..592 CDD:238020 29/143 (20%)
FN3 613..700 CDD:238020 25/88 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR44170
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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