DRSC/TRiP Functional Genomics Resources

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Protein Alignment fra and sdk

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster


Alignment Length:1865 Identity:405/1865 - (21%)
Similarity:634/1865 - (33%) Gaps:543/1865 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 QALSFTLEPQD--AVVPEGHSVLLQCAGTASIGRGGKSKSNLPSSVSIRWRGPDGQDLVIVGDTF 95
            ||..||..|..  ::|.||.:.:|||   .::|        .|.. :.||.    :|.|.|||..
  Fly    70 QAPRFTTHPSSSGSIVSEGSTKILQC---HALG--------YPQP-TYRWL----KDGVPVGDFS 118

  Fly    96 RTQLKNGSLYISSVEENRGLTGAYQCLLTAEGVGSILSRPALVAIVRQPDLNQDFLETYL--LPG 158
            .:|...   :.|:..|:   .|:||| :.....|||.|..:.| :|....:.::..|..|  :.|
  Fly   119 SSQFYR---FHSTRRED---AGSYQC-IARNDAGSIFSEKSDV-VVAYMGIFENTTEGRLTVISG 175

  Fly   159 QTAYFRCMLGEANWQEGVK-HSVQWLKDDLPLPLDKLRMVVLPNGALEIDEVGPSDRGSYQCNVT 222
            ..|.|     :....|.:. .||.|..:|.||..| ::........|.|.....:||..|:....
  Fly   176 HPAIF-----DMPPIESIPVPSVMWQSEDGPLNYD-IKYAFTHANQLIILSADENDRKGYRAKAI 234

  Fly   223 SGSSSRLSSKTNLNIKKPSDPGAENSVAPSFLVGPSPKTVREG-DTVTLDCVANGVPKPQIK--W 284
            :....:..|...:::....||..|  |||..:|.|....|:.| ..|.|.|:||..|..:::  |
  Fly   235 NTQLGKEESSAFVHLNVSGDPYIE--VAPEIIVRPQDVKVKVGTGVVELQCIANARPLHELETLW 297

  Fly   285 LRNGMDLD-------FNDLDSRFSIVGTGSLQISSAEDIDSGNYQCRA---SNTVDSLDAQATVQ 339
            |::|:.::       .||..:|       :|.:..|....||.|.|:.   |....::.|.|.:|
  Fly   298 LKDGLAVETAGVRHTLNDPWNR-------TLALLQANSSHSGEYTCQVRLRSGGYPAVSASARLQ 355

  Fly   340 VQEPPKFIKAPKDTTAHE-KDEPELKCDIWGKPKPVIRWLKNGDLITPNDYMQLVDGH------- 396
            :.|||.|....:..|..| ..:.:|.||:.|:|.|.::|.:|.         :.||.|       
  Fly   356 ILEPPLFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNA---------ESVDAHIESGRYT 411

  Fly   397 -----NLKILGLLNSDAGMFQCVGTNAAGSVHAAARLRVVPQGVKIKKRKSQGHSTKSLQTFDNL 456
                 .|.|..|:..||.||||:..|.||...|:..|||        |.|:..:..|.|.....|
  Fly   412 LNTDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRV--------KTKTAKNRVKRLAQPRIL 468

  Fly   457 TKRRKPFNSGEQLRTKSGGS-----FPF---------PDEDDDLDDNDSGTTRLRIPSGKLPKFE 507
            ..|......|.:..::||.|     |.|         |.....||..|: |...|......|...
  Fly   469 RVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDA-TISCRAVGSPNPNIT 532

  Fly   508 QPLND-------RRFNILNAGSAL----------------------------------------P 525
            ...|:       .|..||.:|..|                                        |
  Fly   533 WIYNETQLVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPP 597

  Fly   526 LDN----------QSKSYEDDDDDYDEDDPAKEALLEAYKQGEDAHKILDSWQQSKSKKSQQQKQ 580
            :|.          |.|...|....|:         ::.|::|:.:..|.:|.:.......|.:.|
  Fly   598 VDTTVLLGLTATLQCKVSSDPSVPYN---------IDWYREGQSSTPISNSQRIGVQADGQLEIQ 653

  Fly   581 SPASPDSPEQDPSVPHPGGKPLDSGLQA--RLPSQPRDLVAQIV---KSRFVTLSWVEPLQNAGD 640
            :..:.|.......|..|||....:...:  .||..|.::..:.:   :.|.:.:||.........
  Fly   654 AVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNSP 718

  Fly   641 VVYYTVYYKMNNSERE---------------QKMVTKSHDDQQVNIQSLLPGRTYQFRVEANTNF 690
            :..:.:      ..||               .::...|.|.:.:.:::|.....|||||.|....
  Fly   719 ISKFII------QRREVSELGPVPDPLLNWITELSNVSADQRWILLENLKAATVYQFRVSAVNRV 777

  Fly   691 GSGASSAPLEVSTQPEVNIAGPPRNFEGYARSHKEIYVKWEEPTVTN------GEILKYRVYYSE 749
            |.|:.|.|..|...|:...:|||..|.|.|||..||..:|:.|...:      |.||:||::...
  Fly   778 GEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYN 842

  Fly   750 NDSGADLYHDSTALEA----VLTELRPHTDYVISVVPFNRNGMGDSSAEIRVKTFSSTPSEPPNN 810
            |...:  |.:.|. ||    ::.||....||::.:..:|..|:|..:...::||....|..||.|
  Fly   843 NVPWS--YQNITN-EAQRNFLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTN 904

  Fly   811 VTLEVTSSSSITVHWEPPAEEDRNGQITGYKIR--------------YRKFKDAPQVKSTPANIR 861
            |.:|..:|::....|.||..:..||...||||:              .|:.|..|.....|...:
  Fly   905 VKVEAINSTAARCRWTPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQ 969

  Fly   862 YFELSNLDRNAEYQVKIAAMTVNGSGPFTEWNRANTLENDLDETQVPGKPIWISIH---PGANNI 923
            ...|..|::..||.:.:...|..|.|..:......|:::..||  |.|      :|   ....::
  Fly   970 TAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDE--VTG------LHFDDVSDRSV 1026

  Fly   924 ALHWGPPQ-----------HPEIKIR-------------------------NY---VLGW---GR 946
            .:.|.||:           ..::|.|                         :|   ::.|   |.
  Fly  1027 KVLWAPPRASNGILTGYTVRYQVKDRPDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGS 1091

  Fly   947 GIPDENTIE---------------LKETERYHILKNLESNMD----------------------- 973
            |||...||:               |...|.:.::.......|                       
  Fly  1092 GIPKTATIQSGVEPVLPHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTARNMTWFTI 1156

  Fly   974 ---------------------YVVSLRARNVKGDGPPIYDNIKTRDEEPVDAPTPLEVPVGLRAI 1017
                                 |.:.|.|.||.|...|   :..|:|.:.:.| .|...|..:...
  Fly  1157 CEINDPDAETLTVTGLVPFTQYRLRLSASNVVGSSKP---SEATKDFQTIQA-RPKHPPFNVTVR 1217

  Fly  1018 TMSSSSIVVYWIDTMLNKNQHVTDNRHYTVSY----GITGSNRY-----RYHNTTDLNCMINDLR 1073
            .||:..:.|.||.  |.:.:...:.|.|.:||    ...|:.:|     ...:.|..:.:::.|.
  Fly  1218 AMSAQQLRVRWIP--LQQTEWYGNPRGYNISYKQLVKTPGTIKYVPRSVVIEDHTANSHVLDSLE 1280

  Fly  1074 PNTQYEFAVKVVKGRRESSWSMSVLNSTYQNVPVTPPREVTVRLDEMNPPTVIVQW--IPPKHTL 1136
            ..|.||..:........|..|.:.:..|.:.||...|  :.|:.:..:..||:|||  :|.:|..
  Fly  1281 EWTLYEVKMNACNDVGCSKESDTAVERTREAVPSYGP--LDVQANATSSTTVVVQWGEVPRQHRN 1343

  Fly  1137 GQITGYNIYYTTDTTKRDRDWSVEAFAGEETM-LMLPN----------LKPYTTYYFKVQA--RT 1188
            |||.||.::|..    .||        |::.: ..:||          ||.|..|:.:|.|  |.
  Fly  1344 GQIDGYKVFYAA----ADR--------GQQVLHKTIPNNATFTTTLTELKKYVVYHVQVLAYTRL 1396

  Fly  1189 TKGANNAPFSALVSYTTSAAV--TMQEPD---TIAKGI------DNEKLLYIIIAATAVVLLVVL 1242
            ..||.:.|...:.::..:..|  .:..||   |:|:.|      .|.|:|       |..:...|
  Fly  1397 GNGALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMARIIWDVPVDPNGKIL-------AYQVTYTL 1454

  Fly  1243 LGVLLL--CRRKPQSSPEH---------------------------TKKSYQKNNVGVPKPPDL- 1277
            .|..:|  .|..|.|....                           |...|..||...|:.|.: 
  Fly  1455 NGSAMLNYSREFPPSDRTFRATELLPGKYYSFSCTAQTRLGWGKIATALVYTTNNRERPQAPSVP 1519

  Fly  1278 WIHHDQMELKNIDKGLHTVTPVCSDGASSSGALTLPRSVVHSEYEVE--------TPVPGHVTNS 1334
            .|...|::       .|.:|...:.|......|..        |.||        .|:|..|..|
  Fly  1520 QISRSQIQ-------AHQITFSWTPGRDGFAPLRY--------YTVEMRENEGRWQPLPERVDPS 1569

  Fly  1335 LDKRSYV---PGYMTTSMNGTMERPQYPRTQYSHQNRSHMTMEAGLSQQSLTQPQSNSMAQTPEH 1396
            |...:.|   | |||                  :|.|...|.:.|.|..|.......::...|..
  Fly  1570 LSSFTAVGLRP-YMT------------------YQFRIQATNDLGPSAFSRESVIVRTLPAAPAV 1615

  Fly  1397 PYGGYDA---------NFCNAGNAAAGNGCVST----------------IESSKRG--HPLKSFS 1434
            ..||...         ...:|...|..||..||                ::|:.:.  |.:...|
  Fly  1616 GVGGLKVVPITTTSVRVQWSALETALWNGDASTGGYRILYQQLSDFPTALQSTPKTDVHGINENS 1680

  Fly  1435 V----------------------PGPP------------PTG-----GATPVTKHTPAVTIRPQN 1460
            |                      |||.            |||     .|.|::.....:..:|..
  Fly  1681 VVLSDLQQDRNYEIVVLPFNSQGPGPATPPAAVYVGEAVPTGEPRAVDAAPISSTEVRLLWKPPK 1745

  Fly  1461 QS-------PYKKPSFSAATPNRLQGGGSVVHSTDEIQRLAPSTS 1498
            ||       .||.......:|..|:.|.......:.:...|.|.|
  Fly  1746 QSMQNGDILGYKIYYLVTYSPQALEPGRKWEEEIEVVSATATSHS 1790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 30/105 (29%)
Ig <180..222 CDD:299845 11/41 (27%)
IG_like 257..340 CDD:214653 24/95 (25%)
IGc2 264..327 CDD:197706 19/75 (25%)
I-set 344..430 CDD:254352 29/98 (30%)
Ig 363..428 CDD:299845 24/76 (32%)
FN3 611..703 CDD:238020 21/109 (19%)
FN3 711..799 CDD:238020 29/97 (30%)
FN3 806..897 CDD:238020 26/104 (25%)
FN3 908..989 CDD:238020 24/184 (13%)
FN3 1011..1097 CDD:238020 20/94 (21%)
FN3 1109..1205 CDD:238020 30/110 (27%)
Neogenin_C 1273..1521 CDD:284094 58/311 (19%)
sdkNP_001284756.1 Ig 71..157 CDD:299845 31/109 (28%)
I-set 72..150 CDD:254352 28/100 (28%)
Ig 172..245 CDD:299845 17/78 (22%)
IG_like 280..356 CDD:214653 20/82 (24%)
Ig 280..343 CDD:299845 17/69 (25%)
IG_like 375..450 CDD:214653 25/83 (30%)
Ig 378..447 CDD:143165 24/77 (31%)
Ig 506..587 CDD:299845 13/81 (16%)
IG_like 506..587 CDD:214653 13/81 (16%)
I-set 592..682 CDD:254352 17/98 (17%)
Ig 595..682 CDD:299845 17/95 (18%)
FN3 686..789 CDD:238020 20/108 (19%)
FN3 798..893 CDD:238020 29/97 (30%)
FN3 901..1005 CDD:238020 26/103 (25%)
fn3 1011..1094 CDD:278470 14/90 (16%)
FN3 1108..1202 CDD:238020 12/96 (13%)
FN3 1210..1308 CDD:238020 20/99 (20%)
fn3 1317..1402 CDD:278470 29/98 (30%)
FN3 1415..1507 CDD:238020 18/98 (18%)
FN3 1513..1608 CDD:238020 27/128 (21%)
fn3 1617..1708 CDD:278470 15/90 (17%)
FN3 1722..1823 CDD:238020 14/69 (20%)
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR44170
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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