DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fra and Igdcc3

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_001344186.1 Gene:Igdcc3 / 19289 MGIID:1202390 Length:813 Species:Mus musculus


Alignment Length:1054 Identity:217/1054 - (20%)
Similarity:323/1054 - (30%) Gaps:424/1054 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LLSSCLIFQLIGSSLA---SQALSFTLEPQDAVVPEGHSVLLQCAGTASIGRGGKSKSNLPSSVS 77
            ||...|:..|...||.   |..|:|::||.|.:...|..::|.|          |.:...|..||
Mouse    32 LLLLLLLLPLPAPSLGLGHSAELAFSVEPNDDIANPGQPIVLGC----------KVEGTPPVQVS 86

  Fly    78 IRWRG---PDGQDLVIVGDTFRTQLKNGSLYISSVEENRGLT----GAYQCLLTAEGVGSILSRP 135
            .|..|   |:|        |..|.|.||||.|......:|.:    |.|:| :.....|.::||.
Mouse    87 WRKNGAELPEG--------THTTLLANGSLLIHHFRLEQGGSPSDEGDYEC-VAQNRFGLLVSRK 142

  Fly   136 ALVAIVRQPDLNQDFLETYLLPGQTAYFRCMLGEANWQEGV-KHSVQWLKDDLPLPLDKLRMVVL 199
            |.:......|.:..........|..|.|:|.:      .|: |..:.|.|:.:|:..|..|..:|
Mouse   143 ARLQAATMSDFHVHPQAVTGEEGGVARFQCQI------HGLPKPLITWEKNRVPIDTDDERYTLL 201

  Fly   200 PNGALEIDEVGPSDRGSYQCNVTSGSSSRLSSKTNLNIKKPSDPGAENSVAPSFLVGPSPKTVRE 264
            |.|.|:|..:...|.|.:.|..::.:|.|:|....|.:   |..|:.....|:.||||...|:..
Mouse   202 PKGVLQITGLRAEDSGIFHCVASNIASVRVSHGARLTV---SGSGSGTYKEPTILVGPENLTLTV 263

  Fly   265 GDTVTLDCVANGVPKPQIKWLRNGMDLDFNDLDSR------FSIVGTGSLQISSAEDIDSGNYQC 323
            ..|..|:|||.|.|:|.:.|.|         ||.|      ..::|||:|.||......||.|.|
Mouse   264 HQTAVLECVATGNPRPIVSWSR---------LDGRPIGVEGIQVLGTGNLIISDVTVQHSGVYVC 319

  Fly   324 RAS--NTVDSLDAQATVQVQEPPKFIKAPKDTTAHEKDEPELKCDIWGKPKPVIRWLKNGDLITP 386
            .|:  .|.....||..:.||.|.:|::.|:..:..........|...|:|.|.:.|||||.::..
Mouse   320 AANRPGTRVRRTAQGRLVVQAPAEFVQHPQSISRPAGTTAMFTCQAQGEPPPHVTWLKNGQVLGA 384

  Fly   387 NDYMQLVDGHN-LKILGLLNSDAGMFQCVGTNAAGSVHAAARLRVVPQGVKIKKRKSQGHSTKSL 450
            ..:::|.:.:: |.|.|:...|..::|||..|.|||..|:|||.|:                   
Mouse   385 GGHVRLKNNNSTLSISGVGPEDEAIYQCVAENIAGSSQASARLTVL------------------- 430

  Fly   451 QTFDNLTKRRKPFNSGEQLRTKSGGSFPFPDEDDDLDDNDSGTTRLRIPSGKLPKFEQPLNDRRF 515
                                                                             
Mouse   431 ----------------------------------------------------------------- 430

  Fly   516 NILNAGSALPLDNQSKSYEDDDDDYDEDDPAKEALLEAYKQGEDAHKILDSWQQSKSKKSQQQKQ 580
                                                               |.:.          
Mouse   431 ---------------------------------------------------WAEG---------- 434

  Fly   581 SPASPDSPEQDPSVPHPGGKPLDSGLQARLPSQPRDLVAQIVKSRFVTLSWVEPLQNAGDVVYYT 645
                                         ||..||::.|..|.|..|.:||.|||.:..:::.|.
Mouse   435 -----------------------------LPGPPRNVRAVSVSSTEVRVSWSEPLAHTKEIIGYV 470

  Fly   646 VYYKMNNSEREQKMVTKSHDDQQVNIQSLLPGRTYQFRVEANTNFGSGASSAPLEVSTQPEVNIA 710
            ::            :.|:.|..::..|..:...|:|..|.                         
Mouse   471 LH------------IRKAADSPKLEYQEAVSKSTFQHLVR------------------------- 498

  Fly   711 GPPRNFEGYARSHKEIYVKWEEPTVTNGEILKYRVYYSENDSGADLYHDSTALEAVLTELRPHTD 775
                                                                      :|.|.|.
Mouse   499 ----------------------------------------------------------DLEPSTA 505

  Fly   776 YVISVVPFNRNGMGDSSAEIRVKTFSSTPSEPPNNVTLEVTSSSSITVHWEP-PAEEDRNGQITG 839
            |...:..:...|...:|......|....|..||.:|.|  ..|||:.:.|:| |.....||   |
Mouse   506 YSFYIKAYTPRGASLASVPTLASTLGEAPVPPPLSVRL--LGSSSLQLLWKPWPRLAQHNG---G 565

  Fly   840 YKIRYRKFKDAPQVKST--------PANIRYFELSNLDRNAEYQVKIAAMTVNGSG----PFTEW 892
            :|:.||      .|.:|        |..:..:.||.||.:..|:||:.|...:|.|    .|...
Mouse   566 FKLFYR------PVSATSFTGPILLPGTVSSYNLSQLDPSTVYEVKLLAYNQHGDGNATVRFVSL 624

  Fly   893 NRAN-----------TLENDLDETQVPGKPIWISIHPGANNIA-----LHWG------------- 928
            ..|:           ..|:..:.|...|  |.|.||.|...|.     |.:|             
Mouse   625 KGASERTALTPPCDCRKEDVTNHTSTTG--IVIGIHIGVTCIIFCVLFLLFGQRGRVLLCKDVEN 687

  Fly   929 ---PPQHPEIKIRNYVLGWGRGIPDENTIELKETERYHILKNLESNMDYVVSLRARNVKGDGPPI 990
               |||.|            |...|...:.|....|                       |:|..:
Mouse   688 QLSPPQGP------------RSQRDPGILALNGLSR-----------------------GEGGQL 717

  Fly   991 YDNIKTRDEEPVDA 1004
                 :|||:||||
Mouse   718 -----SRDEKPVDA 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845 31/110 (28%)
Ig <180..222 CDD:299845 13/41 (32%)
IG_like 257..340 CDD:214653 29/90 (32%)
IGc2 264..327 CDD:197706 24/70 (34%)
I-set 344..430 CDD:254352 27/86 (31%)
Ig 363..428 CDD:299845 23/65 (35%)
FN3 611..703 CDD:238020 19/91 (21%)
FN3 711..799 CDD:238020 6/87 (7%)
FN3 806..897 CDD:238020 31/114 (27%)
FN3 908..989 CDD:238020 19/101 (19%)
FN3 1011..1097 CDD:238020
FN3 1109..1205 CDD:238020
Neogenin_C 1273..1521 CDD:284094
Igdcc3NP_001344186.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Ig 56..147 CDD:325142 31/109 (28%)
Ig 158..239 CDD:325142 23/86 (27%)
Ig_3 250..321 CDD:316449 29/79 (37%)
I-set 343..429 CDD:254352 27/85 (32%)
FN3 436..529 CDD:238020 25/187 (13%)
fn3 <556..615 CDD:306538 19/67 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 689..724 13/74 (18%)
DNA_pol3_gamma3 <690..>812 CDD:331207 17/77 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 775..813
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4221
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR44170
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.