DRSC/TRiP Functional Genomics Resources

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Protein Alignment fra and pxn-1

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_505188.3 Gene:pxn-1 / 191484 WormBaseID:WBGene00004256 Length:1285 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845
Ig <180..222 CDD:299845
IG_like 257..340 CDD:214653
IGc2 264..327 CDD:197706
I-set 344..430 CDD:254352
Ig 363..428 CDD:299845
FN3 611..703 CDD:238020
FN3 711..799 CDD:238020
FN3 806..897 CDD:238020
FN3 908..989 CDD:238020
FN3 1011..1097 CDD:238020
FN3 1109..1205 CDD:238020
Neogenin_C 1273..1521 CDD:284094
pxn-1NP_505188.3 LRRNT 23..51 CDD:279764
leucine-rich repeat 35..53 CDD:275380
LRR_8 52..112 CDD:290566
LRR_4 53..93 CDD:289563
leucine-rich repeat 54..77 CDD:275380
LRR_4 77..120 CDD:289563
leucine-rich repeat 78..101 CDD:275380
leucine-rich repeat 102..117 CDD:275380
LRR_8 123..182 CDD:290566
leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 149..172 CDD:275380
I-set 315..400 CDD:254352
IGc2 328..392 CDD:197706
IG_like 414..496 CDD:214653
Ig 420..496 CDD:299845
An_peroxidase 634..1181 CDD:281139
peroxidasin_like 757..1203 CDD:188658
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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