DRSC/TRiP Functional Genomics Resources

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Protein Alignment fra and C27B7.7

DIOPT Version :9

Sequence 1:NP_523716.2 Gene:fra / 36377 FlyBaseID:FBgn0011592 Length:1526 Species:Drosophila melanogaster
Sequence 2:NP_001255352.1 Gene:C27B7.7 / 177708 WormBaseID:WBGene00007764 Length:1456 Species:Caenorhabditis elegans


Alignment Length:793 Identity:174/793 - (21%)
Similarity:294/793 - (37%) Gaps:187/793 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   610 LPSQPRDLVAQIVKSRFVTLSWVEPLQNAGDVVYYTVYYKMNNSEREQKMVTKSHDDQQVNIQSL 674
            :|..|..:..:|:.:..|.:|:| |..:...:..||:.||...:|..:.:..||..|.:|.:..|
 Worm   132 IPKAPLIVNTKILYNSSVLISFV-PADDVNAIENYTLMYKQMEAEEWKSLNFKSDFDGKVLLDGL 195

  Fly   675 LPGRTYQFRVEANTNFGSGA----------SSAPLEVSTQPEVNIAGPPRNFEGYARSHKEIYVK 729
            :|..||:.::........|.          |:|...|.|:|:......|:.              
 Worm   196 IPNHTYEIKIFVTGGIVQGTPSNLATFTTNSTALALVKTEPDEEYTADPQT-------------- 246

  Fly   730 WEEP---TVTNGEILKYRVYYSENDSGADLYHDSTALEAVLTELRPHTDYVISVVP--------- 782
             .||   |.|...:.|..|.:..|  |..:..|| :...|:|.:  |.|::.|.:.         
 Worm   247 -NEPLSITCTVKSVSKASVLWKVN--GIKVSVDS-SFYTVVTSV--HEDFIESTIRAKSRTRSAK 305

  Fly   783 ---FNRNGMGDSSAEIRVKTFSSTPSEPPNNVTLEVTSSSSITVHWEPPAEEDRNGQITGYKIRY 844
               ...|..||||.|:.|  ....|..||:.:|| |......|:.|:||:..  ||:||.|.:.:
 Worm   306 FTCLATNDAGDSSKEVNV--IIKGPGSPPSEITL-VAEKRGYTISWKPPSHP--NGKITKYVVYH 365

  Fly   845 RKFKDAPQVKSTPANIRYFELSN--------LDRNAEYQVKIAAMTVNGSGPFTEW------NRA 895
            ...::.|.     ::.|..:|..        :|....:..::.|.|..|.|..::.      .:.
 Worm   366 TLNREDPL-----SDWRKIDLDGSEKMVRIIMDTEESFYGRVQAATELGPGIISDIVAMERDTQP 425

  Fly   896 NTLENDL----DETQVPGKPIWISIHPGANNIALHWGPPQHPEIKIRNYVLGWGRGIPDENTIEL 956
            .::|:||    ..|.|......:||...|.      |.|: |.|.:         .|.|......
 Worm   426 ISVESDLFGVSATTMVVNPRETLSIQCTAR------GKPR-PSISV---------AISDRKNASQ 474

  Fly   957 KETERYHILKNLES--------NMDYVVS----LRARNVKGDGPPIYDNIKTRDEEPVDAPTPLE 1009
            .|.:.:..|:...|        |...:.|    .||:|..|..   |..::.:.::|.||||.::
 Worm   475 VEVDVWSRLQATSSAGIVSAVHNFSVLTSKFVHCRAKNSAGSN---YSTMELKVDKPGDAPTQIQ 536

  Fly  1010 VPVGLRAITMSSSSIVVYWIDTMLNKNQHVTDNRHYTVSYGITGSN----------RYRYH-NTT 1063
            |      :::::...:|.|..... .|..:|       ||.:..||          :|..: ..|
 Worm   537 V------LSVNALDALVVWHSPQF-PNSPIT-------SYIVLVSNDDKEDKSTWLQYESNAKET 587

  Fly  1064 DLNCMI---NDLRPNTQYEFAVKVVKGRRESSWSMSVLNSTYQNVPVTPPREVTVRLDEMNPPTV 1125
            .:|.|:   .:|..:|:|...|:..........|..:...|....|.:||..:.|.::|.|  .|
 Worm   588 QINRMLLPTGNLEKSTEYFVCVRAKNAAGIGPTSSLISFITLNGGPDSPPDNLKVLINEAN--QV 650

  Fly  1126 IVQWIPPKHTLGQITGYNIYYTTDTTKRDRD---WSVEAFAGEETML---MLPNLKPYTTYYFKV 1184
            ||.|..|..|. ::|||.||||.|.:..:.|   |.........|..   :...|||.|.|..::
 Worm   651 IVYWNTPNSTT-EVTGYLIYYTRDLSLSNDDYKNWQFVEMNNNSTRYKFDLSVGLKPKTFYRVRI 714

  Fly  1185 QARTTKGANNAPFSALVSYTTSAAV----------------------TMQEPDTIAKGIDNEKLL 1227
            ..:.:..  :.|.|.:|.:.|:.:.                      .:::||..:|.:...:  
 Worm   715 SGKNSHA--DGPASEVVEFETAYSEVPIPTDLKTEVLDDNTIHIKFNAVRDPDDHSKALGEYR-- 775

  Fly  1228 YIIIAATAVVLLVVLLGVLLLCRRKPQSSPEHTKKSYQKNNVGVPKPPDLWIHHDQM-------E 1285
             |.:|||..||..:.          .|..|:..|.....:.|.|....|. :..:||       .
 Worm   776 -IDLAATDDVLHALW----------KQIEPKSIKIDEISSMVDVEIDGDS-VEKNQMYWVKVTAR 828

  Fly  1286 LKNIDKGLHTVTP 1298
            |.|...|:|:..|
 Worm   829 LDNPSWGMHSSKP 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fraNP_523716.2 Ig 36..140 CDD:299845
Ig <180..222 CDD:299845
IG_like 257..340 CDD:214653
IGc2 264..327 CDD:197706
I-set 344..430 CDD:254352
Ig 363..428 CDD:299845
FN3 611..703 CDD:238020 24/101 (24%)
FN3 711..799 CDD:238020 23/102 (23%)
FN3 806..897 CDD:238020 22/104 (21%)
FN3 908..989 CDD:238020 18/92 (20%)
FN3 1011..1097 CDD:238020 17/99 (17%)
FN3 1109..1205 CDD:238020 30/101 (30%)
Neogenin_C 1273..1521 CDD:284094 8/33 (24%)
C27B7.7NP_001255352.1 FN3 133..224 CDD:238020 21/91 (23%)
Ig 250..322 CDD:143165 19/76 (25%)
FN3 330..417 CDD:238020 22/94 (23%)
I-set 440..525 CDD:254352 20/103 (19%)
FN3 530..628 CDD:238020 22/111 (20%)
FN3 635..733 CDD:238020 30/102 (29%)
Ig 873..946 CDD:143165
FN3 954..1043 CDD:238020
FN3 1249..1337 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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