DRSC/TRiP Functional Genomics Resources

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Protein Alignment achi and pbx3b

DIOPT Version :9

Sequence 1:NP_001286352.1 Gene:achi / 36373 FlyBaseID:FBgn0033749 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_009302358.1 Gene:pbx3b / 58140 ZFINID:ZDB-GENE-000405-3 Length:471 Species:Danio rerio


Alignment Length:354 Identity:74/354 - (20%)
Similarity:131/354 - (37%) Gaps:77/354 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SPEQEEVNMVLDRHVRQNIQDMMH---EAHVQA---------SLLENEGRGRFHSDSSLDQ--DS 53
            ||....:.....|.....|:.:.|   |.:.||         :||..:.|.|..|...:::  ..
Zfish   142 SPTDNSIEHSDYRAKLSQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSI 206

  Fly    54 LH---ADVIVEEDQSTEHGANQVQNYHDMMVDSEHHIDINGSLRKRRGNLPKTSVKILKRWLYEH 115
            :|   :.:.::..|||         ...:|:.....:|    .|::|.|..|.:.:||..:.|.|
Zfish   207 IHRKFSSIQMQLKQST---------CEAVMILRSRFLD----ARRKRRNFSKQATEILNEYFYSH 258

  Fly   116 RYNAYPSDAEKFTLSQEAN----------LTVLQVCNWFINARRRILPEMIRREGNDPLHFTISR 170
            ..|.|||:..|..|:::.:          :||.||.|||.|.|.|....:.:.:....|:     
Zfish   259 LSNPYPSEEAKEELAKKCSITVSQGVGTTITVAQVSNWFGNKRIRYKKNIGKFQEEANLY----- 318

  Fly   171 RGKKVSPNCSRSSALGA------NLTGPNPAHGSPASEVVVGATEEVDGAGEIHEGIANVLTNFE 229
             ..|.:...:.::|...      :.|.||........|.      ::|.|...:..:.|:.|...
Zfish   319 -AAKTAVTAAHAAAAAVQNSQTNSPTTPNSGFQMKDEEF------QLDSAENKNTLLTNMFTGSS 376

  Fly   230 QYVQGPNGQMVKMEPEYEDSVIYSWQQAIANNPMGFQSLHSSLQATMIDKIKNYQMRKAA---AI 291
            .....||...:.|..:..:...|...|..||    .||        .:|.:::...:.|.   .:
Zfish   377 GSFNLPNSGDLFMSMQNLNGDSYQGAQVGAN----VQS--------QVDTLRHVISQTAGYNDVL 429

  Fly   292 GGSAV----GSGGAGGSSSNSSPATSILP 316
            ||:.:    |..|.||....::|::.|.|
Zfish   430 GGNPMYSPHGLNGNGGWQDATTPSSVISP 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
achiNP_001286352.1 Homeobox_KN 111..150 CDD:283551 17/48 (35%)
pbx3bXP_009302358.1 PBC 42..235 CDD:281746 18/101 (18%)
homeodomain 237..307 CDD:238039 24/69 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587160
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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