DRSC/TRiP Functional Genomics Resources

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Protein Alignment achi and Meis3

DIOPT Version :10

Sequence 1:NP_725183.1 Gene:achi / 36373 FlyBaseID:FBgn0033749 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_038937577.1 Gene:Meis3 / 361514 RGDID:1308532 Length:443 Species:Rattus norvegicus


Alignment Length:130 Identity:45/130 - (34%)
Similarity:69/130 - (53%) Gaps:12/130 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 EHHIDINGSLRKRRGNLPKTSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINAR 148
            :..:|:.....|:||..||.:..|::.||::|..:.|||:.:|..|:|:..||:|||.|||||||
  Rat   321 DEDLDLERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINAR 385

  Fly   149 RRILPEMIRREGNDPLHFTISRRGKKVSPNCSRSSALGANLTGPNPAHGSPASEVVVGATEEVDG 213
            |||:..||.:.         :|.|:..|.|....|..|...|.|:....:|.|   :|....::|
  Rat   386 RRIVQPMIDQS---------NRTGQGASFNPEGQSMAGYTETQPHVTVRTPGS---MGMNLNLEG 438

  Fly   214  213
              Rat   439  438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
achiNP_725183.1 Homeobox_KN 112..150 CDD:428673 20/37 (54%)
Meis3XP_038937577.1 Meis_PKNOX_N 99..234 CDD:465140
Homeobox_KN 349..387 CDD:428673 20/37 (54%)
Blue background indicates that the domain is not in the aligned region.

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