Protein Alignment achi and Pbx1

DIOPT Version :10

• Sequence 1: NP_725183.1
• Gene: achi / 36373
• FlyBaseID: FBgn0033749
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: NP_001128334.1
• Gene: Pbx1 / 304947
• RGDID: 1308213
• Length: 430
• Species: Rattus norvegicus
• Alignment Length: 280
• Identity: 65/280 - (23%)
• Similarity: 117/280 - (41%)
• Gaps: 69/280 - (24%)

  Fly    29 HVQASLLENEGRGRFHSDSSLDQ--DSLH---ADVIVEEDQSTEHGANQVQNYHDMMVDSEHHID 88
            ||. :||..:.|.|..|...:::  ..:|   :.:.::..|||         ...:|:.....:|
  Rat   178 HVM-NLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLKQST---------CEAVMILRSRFLD 232

  Fly    89 INGSLRKRRGNLPKTSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILP 153
                .|::|.|..|.:.:||..:.|.|..|.|||:..|..|:::..:||.||.|||.|.|
  Rat   233 ----ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKR----- 288

  Fly   154 EMIRREGNDPLHFTISRRGKKVSPNCSRSSALGANLTGPNPAHG----SPASEVVVGATE--EVD 212
              ||.:.|      |.:..::.:...::::....|::    |||    ||::....|::.  .:.
  Rat   289 --IRYKKN------IGKFQEEANIYAAKTAVTATNVS----AHGSQANSPSTPNSAGSSSSFNMS 341

  Fly   213 GAGEIHEGIANVLTNFEQYVQ-GPNGQ--------MVKMEPEYED----SVIYS---------WQ 255
            .:|::...:.::..:..|..| |.|.|        ::.....|.|    |.:||         ||
  Rat   342 NSGDLFMSVQSLNGDSYQGAQVGANVQSQVDTLRHVISQTGGYSDGLAASQMYSPQGISANGGWQ 406

  Fly   256 QA-----IANNPMGFQSLHS 270
            .|     :.:...|..|:||
  Rat   407 DATTPSSVTSPTEGPGSVHS 426

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
achi	NP_725183.1	Homeobox_KN	112..150	CDD:428673	17/37 (46%)
Pbx1	NP_001128334.1	PBC	42..232	CDD:461052	12/63 (19%)
		homeodomain	234..294	CDD:238039	25/66 (38%)