DRSC/TRiP Functional Genomics Resources

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Protein Alignment achi and pknox2

DIOPT Version :10

Sequence 1:NP_725183.1 Gene:achi / 36373 FlyBaseID:FBgn0033749 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001120899.1 Gene:pknox2 / 100151724 XenbaseID:XB-GENE-853128 Length:468 Species:Xenopus tropicalis


Alignment Length:231 Identity:63/231 - (27%)
Similarity:98/231 - (42%) Gaps:57/231 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SPEQEEVNMVLDRHVRQNIQDMMHEAHVQASLLENEGRGRFHSDSSLDQDSLHADVIVEED---- 63
            ||.|...::        :.|||:..:....:.|.|..:|.....|:|.|.::....:....    
 Frog   184 SPNQPSNSL--------HTQDMLQNSPNSMTGLSNNPQGIVVPASALQQGNISMTTVNSSQVVSG 240

  Fly    64 ------------------QSTEHGANQVQNYH-----DMMVDSEHHIDINGSLRKRRGNLPKTSV 105
                              |:...||.|:||..     ..::|||     :...:.:||.|||.:.
 Frog   241 GALYQPVAMVTSQGQVVTQAIPQGAIQIQNAQVNLELTSLLDSE-----DKKSKNKRGVLPKHAT 300

  Fly   106 KILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEMIRREGNDPLHFTISR 170
            .|::.||::|..:.||::.||..::.:.|||:|||.|||||||||||..|:.....||     :.
 Frog   301 NIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPDP-----AP 360

  Fly   171 RGKKVS----------PNCSRSSAL--GANLTGPNP 194
            :.||:.          ||...:..|  ...|.|.||
 Frog   361 KAKKIKSQHRPTQRFWPNSIAAGVLQQQGGLPGTNP 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
achiNP_725183.1 Homeobox_KN 112..150 CDD:428673 19/37 (51%)
pknox2NP_001120899.1 Meis_PKNOX_N 95..180 CDD:465140
Homeobox_KN 307..345 CDD:428673 19/37 (51%)
Blue background indicates that the domain is not in the aligned region.

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