DRSC/TRiP Functional Genomics Resources

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Protein Alignment achi and pknox2

DIOPT Version :9

Sequence 1:NP_001286352.1 Gene:achi / 36373 FlyBaseID:FBgn0033749 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001120899.1 Gene:pknox2 / 100151724 XenbaseID:XB-GENE-853128 Length:468 Species:Xenopus tropicalis


Alignment Length:231 Identity:63/231 - (27%)
Similarity:98/231 - (42%) Gaps:57/231 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SPEQEEVNMVLDRHVRQNIQDMMHEAHVQASLLENEGRGRFHSDSSLDQDSLHADVIVEED---- 63
            ||.|...::        :.|||:..:....:.|.|..:|.....|:|.|.::....:....    
 Frog   184 SPNQPSNSL--------HTQDMLQNSPNSMTGLSNNPQGIVVPASALQQGNISMTTVNSSQVVSG 240

  Fly    64 ------------------QSTEHGANQVQNYH-----DMMVDSEHHIDINGSLRKRRGNLPKTSV 105
                              |:...||.|:||..     ..::|||     :...:.:||.|||.:.
 Frog   241 GALYQPVAMVTSQGQVVTQAIPQGAIQIQNAQVNLELTSLLDSE-----DKKSKNKRGVLPKHAT 300

  Fly   106 KILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEMIRREGNDPLHFTISR 170
            .|::.||::|..:.||::.||..::.:.|||:|||.|||||||||||..|:.....||     :.
 Frog   301 NIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPDP-----AP 360

  Fly   171 RGKKVS----------PNCSRSSAL--GANLTGPNP 194
            :.||:.          ||...:..|  ...|.|.||
 Frog   361 KAKKIKSQHRPTQRFWPNSIAAGVLQQQGGLPGTNP 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
achiNP_001286352.1 Homeobox_KN 111..150 CDD:283551 20/38 (53%)
pknox2NP_001120899.1 Meis_PKNOX_N 95..180 CDD:406806
Homeobox_KN 306..345 CDD:399131 20/38 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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