DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vis and HMRA2

DIOPT Version :10

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_010020.1 Gene:HMRA2 / 850458 SGDID:S000000692 Length:119 Species:Saccharomyces cerevisiae


Alignment Length:111 Identity:29/111 - (26%)
Similarity:51/111 - (45%) Gaps:6/111 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 VGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRKRRGN-LPKSSVKILKRWLYEHRYNAYPSD 121
            :.||.|..|...:.::...::.:......||.|.:..||: ..|.:|:||:.|..::..|.|...
Yeast     4 IENDRSNYQLTQKNKSADGLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDT 68

  Fly   122 AEKFTLSQEANLTVLQVCNWFINARRR-----ILPEMIRREGNDPL 162
            .....|.:..:|:.:|:.||..|.||:     |.||:......:||
Yeast    69 KGLENLMKNTSLSRIQIKNWVSNRRRKEKTITIAPELADLLSGEPL 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 110..148 CDD:428673 9/37 (24%)
HMRA2NP_010020.1 HOX 44..97 CDD:197696 15/52 (29%)

Return to query results.
Submit another query.