DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vis and Pknox2

DIOPT Version :10

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001258207.1 Gene:Pknox2 / 680549 RGDID:1590611 Length:475 Species:Rattus norvegicus


Alignment Length:267 Identity:70/267 - (26%)
Similarity:114/267 - (42%) Gaps:72/267 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SPEQEEVNMVLDRHVRQNIKDLMHEAHVHASLLNNEGRDRFHSDSSLDQDSL-------HAVVGN 60
            ||.|..:|:        :.:||:..:....|.::|..:......|:|.|.::       ..|.|.
  Rat   185 SPNQPSINL--------HSQDLLQNSPNSMSGVSNNPQGIVVPASALQQGNIAMTTVNSQVVSGG 241

  Fly    61 DL----------------STEQGANQVQNYHDMMVDSEHHVDINGSL-------RKRRGNLPKSS 102
            .|                :..|||.|:||       ::.::|:...|       :.:||.|||.:
  Rat   242 ALYQPVTMVTSQGQVVTQAIPQGAIQIQN-------TQVNLDLTSLLDNEDKKSKNKRGVLPKHA 299

  Fly   103 VKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEMIRREGNDPLHFTIS 167
            ..|::.||::|..:.||::.||..::.:.|||:|||.|||||||||||..|:.....||     :
  Rat   300 TNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPDP-----A 359

  Fly   168 RRGKKV----------------VGATEEVDGA-GEIHEGIANVLTNFEQYVQGPNGQMV---KME 212
            .:.||:                .|..::..|. |...:|..| |.|. |.:...|..|.   .|.
  Rat   360 PKAKKIKSQHRPTQRFWPNSIAAGVLQQQGGTPGTNPDGSIN-LDNL-QSLSSDNATMAMQQAMM 422

  Fly   213 PEYEDSV 219
            ..::||:
  Rat   423 AAHDDSL 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 110..148 CDD:428673 19/37 (51%)
Pknox2NP_001258207.1 PLN02983 <3..>66 CDD:215533
Meis_PKNOX_N 96..181 CDD:465140
Homeobox_KN 307..345 CDD:428673 19/37 (51%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.