DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and Irx6

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_071873.2 Gene:Irx6 / 64379 MGIID:1927642 Length:439 Species:Mus musculus


Alignment Length:331 Identity:79/331 - (23%)
Similarity:113/331 - (34%) Gaps:94/331 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 RRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEMIRREG 158
            ||.|..:.|...||.||:|||.|.||:..||..|:....:|:.||..||.|||||     :::|.
Mouse   146 RRKNATRESTSALKAWLHEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR-----LKKEN 205

  Fly   159 NDPLHFTISRRGKKVVGATEEVDGAGEIHEGIANVLTNFEQYVQGPNG---------QMVKMEPE 214
            .    .|.:.:.|   |..|....:||...|..|..|......|...|         :..:.|.|
Mouse   206 K----MTWAPKNK---GGEERKADSGEDSLGCLNGDTKDATASQEARGLRLSDLEDLEEEEEEEE 263

  Fly   215 YEDSVIYSWQQAIANNPMGFQSLH---SSLQATMIDK------IKNYQMRKAAAIGGS---AVGS 267
            .|:....|..:.:|:.....|.|.   ::.|...::.      :..:...:|...|.:   ....
Mouse   264 AEEEAAVSAARRLADFQKSTQPLPAPCAAAQERCLESRECGLGLPRFSFTEAPQSGEADFITAEP 328

  Fly   268 GG---------------------AGGSSSNSSPATSILPYSLFGQLPPEFDDEE---KPRPPKRV 308
            ||                     |..|:..|:|:|           ||.....|   .||.|..:
Mouse   329 GGPTMILHYPSGHKPRIWSLAHTAAASAVESAPST-----------PPRAQSPECHMIPRQPSSI 382

  Fly   309 RTRTVAAKSPRENAKQAKQKTGNKQETMYCYKDSYGGIVVSPRSEGEESAQGYE-SCGP---NSE 369
            |...|...|..|....|.:..||...|:                      ||.. :|.|   ..|
Mouse   383 RRLLVPRDSEGEEDSPAAKAFGNSTFTL----------------------QGLPLNCAPYPRRRE 425

  Fly   370 EEVRFE 375
            .||||:
Mouse   426 PEVRFQ 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 19/38 (50%)
Irx6NP_071873.2 COG5576 <142..232 CDD:227863 35/97 (36%)
Homeobox_KN 161..200 CDD:283551 19/38 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 205..270 14/71 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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