Protein Alignment vis and pbx1a

DIOPT Version :10

• Sequence 1: NP_788337.1
• Gene: vis / 36372
• FlyBaseID: FBgn0033748
• Length: 524
• Species: Drosophila melanogaster
• Sequence 2: NP_571689.1
• Gene: pbx1a / 58138
• ZFINID: ZDB-GENE-000405-1
• Length: 428
• Species: Danio rerio
• Alignment Length: 267
• Identity: 65/267 - (24%)
• Similarity: 106/267 - (39%)
• Gaps: 38/267 - (14%)

  Fly    29 HVHASLLNNEGRDRFHSDSSLDQDSLHAVVGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRK 93
            || .:||..:.|.|..|...:::  :.:::....|:.|...:......:|:.....:|    .|:
Zfish   177 HV-MNLLREQSRTRPISPKEIER--MVSIIHRKFSSIQMQLKQSTCEAVMILRSRFLD----ARR 234

  Fly    94 RRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEM--IRR 156
            :|.|..|.:.:||..:.|.|..|.|||:..|..|:::.::||.||.|||.|.|.|....:  .:.
Zfish   235 KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKKNIGKFQE 299

  Fly   157 EGNDPLHFT------ISRRGKKV--VGATEEVDGAGEIHEGIANVLTNFEQYVQGPNGQMVKMEP 213
            |.|.....|      :|..|.:.  .........||..:....::..:    ||..||
Zfish   300 EANMYAARTAANATSVSTHGSQANSPSTPNSAGSAGSFNMNSGDLFMS----VQSLNG------- 353

  Fly   214 EYEDSVIYSWQQAIANNPMGFQSLHSSLQATMIDKIKNYQMRKAAAIGGSAVGSGGAGGSSSNSS 278
               ||  |...|..||    .||...:|: .:|.:...|....||:...|..|....||.....:
Zfish   354 ---DS--YQGAQVGAN----VQSQVDTLR-HVISQTGGYSESLAASQIYSPQGINANGGWQDAPT 408

  Fly   279 PATSILP 285
            |::...|
Zfish   409 PSSVTSP 415

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vis	NP_788337.1	Homeobox_KN	110..148	CDD:428673	17/37 (46%)
pbx1a	NP_571689.1	PBC	41..231	CDD:461052	10/56 (18%)
		homeodomain	233..293	CDD:238039	24/59 (41%)