DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and pbx2

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_017206849.1 Gene:pbx2 / 58136 ZFINID:ZDB-GENE-000405-5 Length:420 Species:Danio rerio


Alignment Length:231 Identity:55/231 - (23%)
Similarity:93/231 - (40%) Gaps:50/231 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 HVHASLLNNEGRDRFHSDSSLDQDSLHAVVGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRK 93
            || .:||..:.|.|..|...:::  :.|::....|:.|...:......:|:.....:|    .|:
Zfish   197 HV-MNLLREQSRTRPVSPREIER--MVAIIHRKFSSIQTQLKQSTCEAVMILRSRFLD----ARR 254

  Fly    94 RRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEMIRREG 158
            :|.|..|.:.::|..:.|.|..|.|||:..|..|:::.::||.||.|||.|.|.|....:.:.:.
Zfish   255 KRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKQCSITVSQVSNWFGNKRIRYKKNIGKYQE 319

  Fly   159 NDPLHFTISRRGKKVVGATEEVD--------GAGEIH-EGIANVLTNFEQYVQGPNGQMVKMEPE 214
            ...|:..     |..:|||:..|        |:|... .|.|:....    |...||:    :|.
Zfish   320 EANLYAM-----KTALGATQSEDSPHTPNSTGSGSFSLSGSADCFLG----VPPMNGE----QPP 371

  Fly   215 Y-------------------EDSVIYSWQQAIANNP 231
            |                   |.....:||:  .|:|
Zfish   372 YHMGAQDAQSRFSERLYITRESRTNGNWQE--QNSP 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 17/38 (45%)
pbx2XP_017206849.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587137
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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