DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vis and irx5a

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001038692.1 Gene:irx5a / 573346 ZFINID:ZDB-GENE-010716-2 Length:446 Species:Danio rerio


Alignment Length:361 Identity:81/361 - (22%)
Similarity:129/361 - (35%) Gaps:85/361 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 RGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEM------ 153
            |.|..:.:...||.||.|||.|.||:..||..|:....:|:.||..||.|||||:..|.      
Zfish   115 RKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTP 179

  Fly   154 --------------IRREGNDPLHFTISRRGKKVVGATEEVDGAGEIHEGIANVLTNFEQYVQGP 204
                          :.:..:|..:....:.......|..::...|||      ....|:......
Zfish   180 RNRSEDEEEDENIDLEKNDDDEPNKPTDKGDSTDTEADHKLINPGEI------PCDRFKDETHSK 238

  Fly   205 NGQMVKMEPEYEDSVIYSWQQ---AIANNPMGFQSLHSSLQ--ATMIDKIKNYQMRKAAAIGGSA 264
            :     ::|...||.:...::   .:|.......|..|.||  :.:|.:.|..:...||:.|.|.
Zfish   239 D-----LDPPLTDSELKEAEERTDLLAEQAKPTTSSPSVLQRGSDLITQEKPSEPGHAASTGNSN 298

  Fly   265 VGSGGAGGSSSNSSPATSILPYSLFGQLPPEFDDEEKPRPPKRVRTRTVAAKSPR-ENAKQAKQK 328
            |               ||::      ..||     ..|: ||......:|..|.| :.:.:|.|.
Zfish   299 V---------------TSVI------HSPP-----SAPK-PKLWSLAEIATSSDRCKGSSEASQA 336

  Fly   329 TGNKQETMYCYKDSYGGIVVSPRSEGEESAQGYESCG-PNSEEEVR--FETSHDWQSVIK-TVFG 389
            .|..|.|          ::.|..|....|.|    |. ||:....|  :.||..:..... :.||
Zfish   337 AGLSQST----------VIASAASPTRSSPQ----CPLPNNTVLSRPIYYTSPFYPGYTNYSTFG 387

  Fly   390 TEEVSTSAGNNPGTSGSKASVQNTAIWNRNQTAKRD 425
              .:.:|.|.|..::.....:..|.: ||.:...|:
Zfish   388 --HLHSSHGTNTSSTAHFNGLSQTVL-NRAEALVRE 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 19/38 (50%)
irx5aNP_001038692.1 Homeobox_KN 129..168 CDD:283551 19/38 (50%)
IRO 307..324 CDD:214716 5/22 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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