DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vis and PBX2

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_002577.2 Gene:PBX2 / 5089 HGNCID:8633 Length:430 Species:Homo sapiens


Alignment Length:297 Identity:61/297 - (20%)
Similarity:113/297 - (38%) Gaps:79/297 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ISPEQEEVNMVLDRHVRQNIKDLMHEAH--------------VHA-SLLNNEGRDRFHSDSSLDQ 51
            :||:    |.:.....|..:..:.|..|              .|. :||..:.|.|..:...:::
Human   150 VSPD----NSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMER 210

  Fly    52 DSLHAVVGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRKRRGNLPKSSVKILKRWLYEHRYN 116
              :.:::....|..|...:......:|:.....:|    .|::|.|..|.:.::|..:.|.|..|
Human   211 --MVSIIHRKFSAIQMQLKQSTCEAVMILRSRFLD----ARRKRRNFSKQATEVLNEYFYSHLSN 269

  Fly   117 AYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEM--IRREGN---DPLHFTISRRGKKVV-- 174
            .|||:..|..|:::..:||.||.|||.|.|.|....:  .:.|.|   .....::::.|....  
Human   270 PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVTQGGHSRTSS 334

  Fly   175 ---------GATEEVDGAGEIHEGIANVLTNFEQY----------VQGPNGQMVKMEPEYEDSV- 219
                     |.:..:.|:|::..|:..:  |.:.|          ..||.|        |.|:: 
Human   335 PTPPSSAGSGGSFNLSGSGDMFLGMPGL--NGDSYSASQVESLRHSMGPGG--------YGDNLG 389

  Fly   220 ---IY---------SWQQAIANNPM-----GFQSLHS 239
               :|         |||:|:..:.:     |..|:||
Human   390 GGQMYSPREMRANGSWQEAVTPSSVTSPTEGPGSVHS 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 17/38 (45%)
PBX2NP_002577.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52
PBC 50..243 CDD:397732 14/98 (14%)
homeodomain 245..305 CDD:238039 23/59 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 326..347 2/20 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..430 14/57 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165152650
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.930

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