DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and irx6a

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_005169033.1 Gene:irx6a / 474317 ZFINID:ZDB-GENE-040712-5 Length:505 Species:Danio rerio


Alignment Length:392 Identity:87/392 - (22%)
Similarity:136/392 - (34%) Gaps:90/392 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 SLHAVVGNDLSTEQGANQVQNYHDM---MVDSEHHVDINGSLRKRRGNLPKSSVKILKRWLYEHR 114
            |||:.:      .|.|......|.:   ..|....||.|||.|::  |..:.:...||.||||||
Zfish   122 SLHSTI------TQPATYYPYDHSLGQYQYDRYGTVDFNGSTRRK--NATRETTSTLKTWLYEHR 178

  Fly   115 YNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPE------MIRREGNDPLHFTISRR---G 170
            .|.||:..||..|:....:|:.||..||.|||||:..|      ...:.|:|       |:   |
Zfish   179 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWSPKNKAGDD-------RKEDLG 236

  Fly   171 KKVVGATEEVDGAGEIHEGIANVLTNFEQ----------YVQGPNGQMVKMEPEYEDSVIYSWQQ 225
            |.....|::...:.:..:...:.|.:.|.          ...|.:.......|:.:.:.......
Zfish   237 KSDPDITKDSKDSKDEQDLQFSDLDDMEDEDCDKLDSDCEKSGQDDLPTSSPPKRDCNPDIPLHS 301

  Fly   226 AIANNPMGFQSLHSSLQATMIDKIKNYQMRKAAAIGGSAVGSGGAGGSSSNSSP-ATSILPYSLF 289
            ...:.|.|.:|| ..|....:|.:                   |:.......|| :|||...:| 
Zfish   302 NFPSFPCGLKSL-GPLNPDYLDHL-------------------GSKPQQQQPSPQSTSINTVAL- 345

  Fly   290 GQLPPEFDDEEKPRPPKRVRTRTV----------------------AAKSPRENAKQAKQKTG-- 330
                ..|:..||||.....||...                      ..:.|...|.|..:..|  
Zfish   346 ----SHFESSEKPRIWSLARTAAAGVVLGTQHVGDVRTGPVDCQMQGVRLPTVGAVQCGELKGLQ 406

  Fly   331 ---NKQETMYCYKDSYGGIVVSPRSEGEESAQGYESCGPNSEEEVRFETSHDWQSVIKTVFGTEE 392
               |...|...:::...||..:..|...::.|.:.|..|...|..::.:...:.|..||...:.|
Zfish   407 DPTNLSNTESLFQEGLQGIHKAYSSGSFKTLQLHSSSYPGLTESCQYSSMEGFPSAGKTETESSE 471

  Fly   393 VS 394
            :|
Zfish   472 LS 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 20/38 (53%)
irx6aXP_005169033.1 Homeobox_KN 173..212 CDD:283551 20/38 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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