DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and Pbx2

DIOPT Version :10

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_063135418.1 Gene:Pbx2 / 406164 RGDID:1303084 Length:643 Species:Rattus norvegicus


Alignment Length:320 Identity:61/320 - (19%)
Similarity:114/320 - (35%) Gaps:97/320 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ISPEQEEVNMVLDRHVRQNIKDLMHEAH--------------VHA-SLLNNEGRDRFHSDSSLDQ 51
            :||:    |.:.....|..:..:.|..|              .|. :||..:.|.|..:...:::
  Rat   335 VSPD----NSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMER 395

  Fly    52 DSLHAVVGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRKRRGNLPKSSVKILKRWLYEHRYN 116
              :.:::....|..|...:......:|:.....:|    .|::|.|..|.:.::|..:.|.|..|
  Rat   396 --MVSIIHRKFSAIQMQLKQSTCEAVMILRSRFLD----ARRKRRNFSKQATEVLNEYFYSHLSN 454

  Fly   117 AYPSDAEKFTLSQEANLTVL----------------------------QVCNWFINARRRILPEM 153
            .|||:..|..|:::..:||.                            ||.|||.|.|.|....:
  Rat   455 PYPSEEAKEELAKKCGITVSQVLRGLRRRYWERGPGERVPLDPLRPTPQVSNWFGNKRIRYKKNI 519

  Fly   154 --IRREGN---DPLHFTISRRGKKVV-----------GATEEVDGAGEIHEGIANVLTNFEQYVQ 202
              .:.|.|   .....::::.|....           |.:..:.|:|::..|:..:  |.:.|  
  Rat   520 GKFQEEANIYAVKTAVSVAQGGHSRTSSPTPPSSAGSGGSFNLSGSGDMFLGMPGL--NGDSY-- 580

  Fly   203 GPNGQMVKME-----PEYEDSV----IYS---------WQQAIANNPM-----GFQSLHS 239
             |..|:..:.     ..|.|::    |||         ||:|:..:.:     |..|:||
  Rat   581 -PASQVESLRHSMGPASYGDNIGGGQIYSPREMRANGGWQEAVTPSSVTSPTEGPGSVHS 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 110..148 CDD:428673 17/65 (26%)
Pbx2XP_063135418.1 None

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