DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vis and irx4a

DIOPT Version :10

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_021322341.1 Gene:irx4a / 402999 ZFINID:ZDB-GENE-040426-1825 Length:441 Species:Danio rerio


Alignment Length:389 Identity:78/389 - (20%)
Similarity:134/389 - (34%) Gaps:100/389 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 EHHVDINGSLR--KRRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFIN 144
            ::..|..||:.  .||.|..:.:...||.||.|||.|.||:..||..|:....:|:.||..||.|
Zfish   126 QYQYDRYGSMEGGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 190

  Fly   145 ARRRILPE-----MIRREGNDPLHFTISRRGKKVVGATEEVDGAGEIHEGIANVLTNFEQYVQGP 204
            ||||:..|     ..|.:|:|...:            .::.||:.|            ||.....
Zfish   191 ARRRLKKENKMTWPPRNKGSDEKKY------------DDDEDGSPE------------EQIKSET 231

  Fly   205 NGQMVKMEPEYEDSVIYSWQQAIANNPMGFQSLHSSLQATMIDKIKNYQMRKAAAIGGSAVGSGG 269
            |......:.|.:|..:...:..   :|:..:|....|:         ::.:.:|.:         
Zfish   232 NDDAESKDREDKDLQLSDLEDF---DPLESESPECELK---------HRFQISAHM--------- 275

  Fly   270 AGGSSSNSSPATSILPYSLFGQLPPEFDDEEKPRPPKRVRTRTVAAKSPRE---NAKQAKQKTGN 331
                                     |..|.:|...|..:.......|||.:   ..:.:|.....
Zfish   276 -------------------------ETKDPQKLSIPGLLEEAKSCLKSPEDCELELRHSKACFQQ 315

  Fly   332 KQETMYCYKDSYGGIVVSPRSEGEESAQGYESC------------GPNSEEEVRFETSHDWQSVI 384
            :|:..:...||...|....::....:...:.||            ||:.:::....|..:|   :
Zfish   316 QQQQSHPILDSKPRIWSLAQTATSLNPAEFPSCMLRCPASPSPAGGPDRQQDSPVTTLRNW---V 377

  Fly   385 KTVFGTEEVSTSAGNNPGTSGS---KASVQNTAIWNRN--QTAKRDVNQQLTDFESELNIIQAS 443
            ..||.......|:.|...|:.|   |.|:..|....|:  .:.|::..:....|...:|.|..|
Zfish   378 DGVFHDPLFRHSSLNQTNTTVSWTNKGSILETGALGRSVADSGKQEAGKDTMTFPKGVNKIFCS 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 110..148 CDD:428673 18/37 (49%)
irx4aXP_021322341.1 COG5576 <140..245 CDD:227863 37/128 (29%)
Homeobox_KN 156..194 CDD:428673 18/37 (49%)

Return to query results.
Submit another query.