DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vis and ara

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_524045.2 Gene:ara / 39439 FlyBaseID:FBgn0015904 Length:717 Species:Drosophila melanogaster


Alignment Length:456 Identity:99/456 - (21%)
Similarity:152/456 - (33%) Gaps:154/456 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LRKRRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPE--- 152
            |..||.|..:.|...||.||.||:.|.||:..||..|:....:|:.||..||.|||||:..|   
  Fly   255 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 319

  Fly   153 ----MIRREGNDPLHFTISRRGKKVVGATEEVDGAGEIHEGIANVLTNFEQYVQGPNG--QMVKM 211
                ..|.:.:|....:...:.|      |:::.:                  :|..|  .:.|.
  Fly   320 TWEPKNRTDDDDDALVSDDEKDK------EDLEPS------------------KGSQGSVSLAKD 360

  Fly   212 EPEYEDSVIYSWQQAIANNPMGFQSLHSSLQATMIDKIKNYQMRKAAAIGGSAVGSG-----GAG 271
            |.:.|:..|...|:.:.             ||.::          .|..|..:.|||     |.|
  Fly   361 ETKEEEDAIDEDQKCLG-------------QANIL----------RAGFGYPSAGSGSGGYPGGG 402

  Fly   272 GSSS----------NSSPA-------TSILPYSLFGQ---LPPEFDDEEK--------PRPPKRV 308
            ||||          :..||       ..:||:  .|:   |..:..|.:.        |.|..:.
  Fly   403 GSSSGHPGGYHPYHHQHPAYYQAGQQGGMLPF--HGENSKLQTDLGDPKNQLGRDCGVPIPATKP 465

  Fly   309 R----TRTVAAKSP--------RENAKQAKQKTGNKQETMYCYKDSYGGIVVSPRSEGEESAQGY 361
            :    ..||..|:|        ....:|.:|:...:|:..:.|          |.||.....|.:
  Fly   466 KIWSLADTVGCKTPPPAYMGHQSMPLQQQQQQQQQQQQAQHQY----------PPSEAGRDQQLF 520

  Fly   362 ESCGPNSEEEVRFETSHDWQSVIKTVFGTEEVSTSAGNNPGTSGSKASVQNTAIWNRNQTAKRDV 426
            ....      ..:...|               :|:.|...|.:..:....|.:|...|...::..
  Fly   521 NGAA------APYLRPH---------------TTAYGGFLGATTQQLHTTNNSIPYSNMPPQQQQ 564

  Fly   427 NQQLTDFESELNIIQASEIQ---TIDPTNSNQQDIGDNLQADEVFTGAEAEAGQSQLSALSQGTS 488
            .||           |..::|   ||..|.|:...| ..||    |.....:. |.||...||.|:
  Fly   565 PQQ-----------QQQQLQQGGTIHTTGSSSGPI-IPLQ----FHNRHPQQ-QQQLQQQSQSTA 612

  Fly   489 S 489
            |
  Fly   613 S 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 18/38 (47%)
araNP_524045.2 Homeobox_KN 273..312 CDD:283551 18/38 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.