Protein Alignment vis and Pbx4

DIOPT Version :10

• Sequence 1: NP_788337.1
• Gene: vis / 36372
• FlyBaseID: FBgn0033748
• Length: 524
• Species: Drosophila melanogaster
• Sequence 2: NP_001101869.1
• Gene: Pbx4 / 361131
• RGDID: 1305100
• Length: 379
• Species: Rattus norvegicus
• Alignment Length: 214
• Identity: 53/214 - (24%)
• Similarity: 91/214 - (42%)
• Gaps: 23/214 - (10%)

  Fly    29 HVHASLLNNEGRDRFHSDSSLDQDSLHAVVGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRK 93
            || .:||..:.|.|..|...::.  :.:.:.:..|..|...:......:|......:|    .|:
  Rat   161 HV-TNLLREQSRVRPVSSGEIEH--MVSTIHSKFSAIQRQLKQSTCEAVMTLRSRFLD----ARR 218

  Fly    94 RRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEMIRREG 158
            :|.|..|.:.::|..:.|.|..|.|||:..|..|:::..:||.||.|||.|.|.|......:.:.
  Rat   219 KRRNFSKQATEVLNEYFYSHLSNPYPSEETKEELARKGGITVSQVSNWFGNKRIRYKKNTGKFQE 283

  Fly   159 NDPLH----FTISRR----GKKVVGATEEVDGAG--EIHEGIANVLT-NFEQYVQGPNGQMVKME 212
            ...::    .|:::.    |:....:|...|..|  .:..|...||| ....::|.|.|. |.::
  Rat   284 EATMYTGKTSTVTKTRVSGGQTSCQSTPSPDSCGPFPLTSGSDMVLTLRTLAFLQPPPGG-VCLQ 347

  Fly   213 PEYEDSVIYSWQQAIANNP 231
            |....    |||:|..:.|
  Rat   348 PLAHG----SWQRATTSQP 362

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vis	NP_788337.1	Homeobox_KN	110..148	CDD:428673	17/37 (46%)
Pbx4	NP_001101869.1	PBC	26..215	CDD:461052	10/56 (18%)
		homeodomain	217..277	CDD:238039	23/59 (39%)