Protein Alignment vis and Pbx3

DIOPT Version :9

• Sequence 1: NP_788337.1
• Gene: vis / 36372
• FlyBaseID: FBgn0033748
• Length: 524
• Species: Drosophila melanogaster
• Sequence 2: NP_001101304.1
• Gene: Pbx3 / 311876
• RGDID: 1307198
• Length: 434
• Species: Rattus norvegicus
• Alignment Length: 288
• Identity: 65/288 - (22%)
• Similarity: 102/288 - (35%)
• Gaps: 77/288 - (26%)

  Fly    29 HVHASLLNNEGRDRFHSDSSLDQDSLHAVVGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRK 93
            || .:||..:.|.|..|...:::  :..::....|:.|...:......:|:.....:|    .|:
  Rat   180 HV-MNLLREQSRTRPISPKEIER--MVGIIHRKFSSIQMQLKQSTCEAVMILRSRFLD----ARR 237

  Fly    94 RRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEMIRREG 158
            :|.|..|.:.:||..:.|.|..|.|||:..|..|:::.::||.||.|||.|.|.|.
  Rat   238 KRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRY--------- 293

  Fly   159 NDPLHFTISRRGKKVVGATEE----------VDGAGEIHEGIANVLTNFEQYVQG--------PN 205
                        ||.:|..:|          |..|..:...:.|..||.......        ||
  Rat   294 ------------KKNIGKFQEEANLYAAKTAVTAAHAVAAAVQNNQTNSPTTPNSGSSGSFNLPN 346

  Fly   206 -GQM-VKMEPEYEDSVIYSWQQAIANNPMGFQSLHSSLQATMIDKIKNYQMRKAAAIGGSAVGSG 268
             |.| :.|:....||  |...|..||......:|...:..|                ||.:.|.|
  Rat   347 SGDMFMNMQSLNGDS--YQGSQVGANVQSQVDTLRHVINQT----------------GGYSDGLG 393

  Fly   269 -----------GAGGSSSNSSPATSILP 285
                       ..||....::|::...|
  Rat   394 ANSLYSPHNLNANGGWQDATTPSSVTSP 421

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vis	NP_788337.1	Homeobox_KN	109..148	CDD:283551	17/38 (45%)
Pbx3	NP_001101304.1	PBC	43..234	CDD:397732	10/56 (18%)
		homeodomain	236..296	CDD:238039	25/80 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166346206
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.930