DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and Pknox1

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_057879.2 Gene:Pknox1 / 18771 MGIID:1201409 Length:436 Species:Mus musculus


Alignment Length:85 Identity:37/85 - (43%)
Similarity:56/85 - (65%) Gaps:4/85 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 QVQNYHDMMVDSEHHVDINGSLRKRRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLT 134
            |:|...|:.:  .|..|  ||.:.:||.|||.:..:::.||::|..:.||::.||..::.:.|||
Mouse   242 QLQLNQDLSI--LHQED--GSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT 302

  Fly   135 VLQVCNWFINARRRILPEMI 154
            :|||.|||||||||||..|:
Mouse   303 LLQVNNWFINARRRILQPML 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 20/38 (53%)
Pknox1NP_057879.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..50
Meis_PKNOX_N 80..165 CDD:374576
Homeobox_KN 277..316 CDD:368670 20/38 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..436
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842733
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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