DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and Pbx2

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_059491.1 Gene:Pbx2 / 18515 MGIID:1341793 Length:430 Species:Mus musculus


Alignment Length:292 Identity:63/292 - (21%)
Similarity:115/292 - (39%) Gaps:69/292 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ISPEQEEVNMVLDRHVRQNIKDLMHEAH--------------VHA-SLLNNEGRDRFHSDSSLDQ 51
            :||:    |.:.....|..:..:.|..|              .|. :||..:.|.|..:...:::
Mouse   150 VSPD----NSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMER 210

  Fly    52 DSLHAVVGNDLSTEQGANQVQNYHDMMVDSEHHVDINGSLRKRRGNLPKSSVKILKRWLYEHRYN 116
              :.:::....|..|...:......:|:.....:|    .|::|.|..|.:.::|..:.|.|..|
Mouse   211 --MVSIIHRKFSAIQMQLKQSTCEAVMILRSRFLD----ARRKRRNFSKQATEVLNEYFYSHLSN 269

  Fly   117 AYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEM--IRREGN---DPLHFTISRRGKKVV-- 174
            .|||:..|..|:::..:||.||.|||.|.|.|....:  .:.|.|   .....::::.|....  
Mouse   270 PYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVAQGGHSRTSS 334

  Fly   175 ---------GATEEVDGAGEIHEGIANVLTNFEQYVQGPNGQMV----KMEP-EYEDSV----IY 221
                     |.:..:.|:|::..|:..:  |.:.|   |..|:.    .|.| .|.|::    ||
Mouse   335 PTPPSSAGSGGSFNLSGSGDMFLGMPGL--NGDSY---PASQVESLRHSMGPGSYGDNIGGGQIY 394

  Fly   222 S---------WQQAIANNPM-----GFQSLHS 239
            |         ||:|:..:.:     |..|:||
Mouse   395 SPREIRANGGWQEAVTPSSVTSPTEGPGSVHS 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 17/38 (45%)
Pbx2NP_059491.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52
PBC 50..243 CDD:309062 14/98 (14%)
homeodomain 245..305 CDD:238039 23/59 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 327..347 2/19 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 375..430 14/52 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842706
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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