DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and ceh-60

DIOPT Version :9

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_509101.4 Gene:ceh-60 / 184803 WormBaseID:WBGene00017690 Length:360 Species:Caenorhabditis elegans


Alignment Length:298 Identity:62/298 - (20%)
Similarity:102/298 - (34%) Gaps:97/298 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 EGRDRFHSDS-----SLDQDSLHAVVGNDLSTEQGANQVQNYHDMM-VDSEHHVDINGSLRKR-- 94
            :|.:|...|:     .||:|...|:..::       ..::|:.|.. :|.:...:|..|:.||  
 Worm    99 DGINRIKEDTIMKQIQLDKDMEKALTNSE-------EVLRNHRDFRPIDEKDFSNIRQSISKRFE 156

  Fly    95 ---------------------------RGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEAN 132
                                       |.|..|::..||:.|.::||.|.||||.||..|:::.|
 Worm   157 HSKNNIRGEAATKILVLRREIEQQGRKRRNFDKNTTDILQNWFHDHRQNPYPSDQEKAELAKQCN 221

  Fly   133 LTVLQVCNWFINARRRILPEMIRREGNDPLHFTISRRGK----------KVVGATEEVDGAGEIH 187
            :.:.||.|||.|.|.|...:.:|.: .|......|...:          ..|.::..:..:|.|:
 Worm   222 IKISQVNNWFGNQRIRTKQQALRMQ-EDERERAASMANEAQAIQNSLNSSTVASSSNMSTSGLIN 285

  Fly   188 EGIANVLTNFEQYVQGPNGQMVKMEPEYEDSVIYSWQQAIANNPMGFQSLHSSLQATMIDKIKNY 252
            ..:.|                    |..:..||.:.|..:..||..|  ||.....|        
 Worm   286 IPLVN--------------------PTMQSMVIPAVQPGLLGNPNAF--LHQPHYFT-------- 320

  Fly   253 QMRKAAAIGGSAVGSGGAGGSSSNSSPATSILPYSLFG 290
                          :||....:.|.:.......|..||
 Worm   321 --------------AGGQMSLNDNGNGQQFFTDYETFG 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 109..148 CDD:283551 19/38 (50%)
ceh-60NP_509101.4 COG5576 138..280 CDD:227863 34/142 (24%)
Homeobox_KN 198..237 CDD:368670 19/38 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157726
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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