DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and pknox1.2

DIOPT Version :10

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_707868.2 Gene:pknox1.2 / 170445 ZFINID:ZDB-GENE-020123-1 Length:445 Species:Danio rerio


Alignment Length:233 Identity:61/233 - (26%)
Similarity:95/233 - (40%) Gaps:72/233 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 QVQNYHDMMVDSEHHVDINGSLRKRRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLT 134
            |:|...|:...|:.    :||.:.:||.|||.:..:::.||::|..:.||::.||..::.:.|||
Zfish   258 QLQLNQDLSFFSQE----DGSSKAKRGILPKHATNVMRSWLFQHIGHPYPTEDEKKQIALQTNLT 318

  Fly   135 VLQVCNWFINARRRILPEMIRREGNDPLHFTISRRGKKVVGATEEVDGAGEIHEGIANVLTNFEQ 199
            :|||.|||||||||||..|:....:|      :.:.||....|..              |..|  
Zfish   319 LLQVNNWFINARRRILQPMLDASSSD------TPKSKKKTPQTRP--------------LQRF-- 361

  Fly   200 YVQGPNGQMVKMEPEYEDSVIYSWQQAIANNPMGFQSLHSSLQATMIDKIKNYQMRKAAAIGGS- 263
                                   |..::|::.       |..|.||.|              |: 
Zfish   362 -----------------------WPNSLASSV-------SQQQVTMED--------------GTT 382

  Fly   264 -AVGSGGAGGSSSNSSPATSILPYSLFGQLPPEFDDEE 300
             .||.|..|..:.:|..||..:...:.|....:.|||:
Zfish   383 VTVGVGEDGLQTLSSDGATLAMQQVMMGGHSEDDDDED 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 110..148 CDD:428673 19/37 (51%)
pknox1.2XP_707868.2 Meis_PKNOX_N 91..176 CDD:465140
Homeobox_KN 294..332 CDD:428673 19/37 (51%)
Blue background indicates that the domain is not in the aligned region.

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