DRSC/TRiP Functional Genomics Resources

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Protein Alignment vis and irx1b

DIOPT Version :10

Sequence 1:NP_788337.1 Gene:vis / 36372 FlyBaseID:FBgn0033748 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_571898.1 Gene:irx1b / 114430 ZFINID:ZDB-GENE-010716-1 Length:445 Species:Danio rerio


Alignment Length:374 Identity:80/374 - (21%)
Similarity:126/374 - (33%) Gaps:129/374 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 RRGNLPKSSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPEMIRREG 158
            |..:..:.:...||.||.||:.|.||:..||..|:....:|:.||..||.|||||     :::|.
Zfish   120 RAKSATRETTSTLKAWLQEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR-----LKKEN 179

  Fly   159 NDPLHFTISRRGKKVVGA-----------TEEVD-------------------GAGEIHEGIANV 193
            ......:...|..::..:           .||:|                   .|...| .|.|:
Zfish   180 KVTCCRSAEDRDGRIFDSDNEDDADKNDDEEEIDLETIDMDKAEEPRVDQNKEAANNPH-AIENI 243

  Fly   194 LT-------------------NFEQYVQGPNGQM-----VKMEPEYEDSVIYSWQQ--------- 225
            .|                   |.||.|....|::     |...|......|:|..:         
Zfish   244 ETPRILSSPALKNTDSPMSSGNREQNVVKSVGEVSPGGAVCQRPGNSKPKIWSLAETATSPDNTQ 308

  Fly   226 --AIANNPMGFQ---SLHSSLQAT------MIDKIKNYQMRKAAAIGGSAVGSGGAGGSSSNSSP 279
              :|.:.|.|.:   |.|.:..:|      .|.|:.|:  ..||.:..::: .|.....|.||: 
Zfish   309 KLSIPSTPAGLRASPSTHPAFLSTNGIYTCQIGKLHNW--ASAAFLSANSL-MGVRSLLSQNSN- 369

  Fly   280 ATSILPYSLFGQLPPEFDDEEKPRPPKRVRTRTVAAKSPRENAKQAKQKTGNKQETMYCYKDSYG 344
                     |....|..:.|:||         :.|:.||..::..:              .||: 
Zfish   370 ---------FPNHSPVTNPEKKP---------SSASGSPCLDSDNS--------------SDSF- 401

  Fly   345 GIVVSPRSEGEESAQGYESCGPNSEEEVRFETSHD------WQSVIKTV 387
                ||:...:|:.|..||  |.......|...||      .|..:||:
Zfish   402 ----SPKHNDQENVQRIES--PTLASRSPFPVIHDRSHHETSQRALKTI 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
visNP_788337.1 Homeobox_KN 110..148 CDD:428673 17/37 (46%)
irx1bNP_571898.1 COG5576 <114..206 CDD:227863 25/90 (28%)
Homeobox_KN 136..174 CDD:428673 17/37 (46%)
IRO 287..304 CDD:214716 3/16 (19%)

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