DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmigd1 and DIP-delta

DIOPT Version :9

Sequence 1:NP_001128501.1 Gene:Tmigd1 / 363654 RGDID:1307444 Length:261 Species:Rattus norvegicus
Sequence 2:NP_001097508.2 Gene:DIP-delta / 5740816 FlyBaseID:FBgn0085420 Length:469 Species:Drosophila melanogaster


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmigd1NP_001128501.1 IG_like 130..211 CDD:214653
Ig strand B 138..142 CDD:409353
Ig strand C 151..155 CDD:409353
Ig strand E 177..181 CDD:409353
Ig strand F 191..196 CDD:409353
DIP-deltaNP_001097508.2 IG 51..143 CDD:214652
Ig 145..238 CDD:416386
Ig strand A 145..149 CDD:409353
Ig strand A' 154..159 CDD:409353
Ig strand B 165..172 CDD:409353
Ig strand C 178..183 CDD:409353
Ig strand C' 185..187 CDD:409353
Ig strand D 195..199 CDD:409353
Ig strand E 203..209 CDD:409353
Ig strand F 216..223 CDD:409353
Ig strand G 230..238 CDD:409353
Ig 242..333 CDD:416386
Ig strand A' 250..253 CDD:409353
Ig strand B 259..266 CDD:409353
Ig strand C 272..277 CDD:409353
Ig strand C' 281..283 CDD:409353
Ig strand D 289..293 CDD:409353
Ig strand E 295..305 CDD:409353
Ig strand F 314..322 CDD:409353
Ig strand G 325..334 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11357
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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