DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lac and opcml

DIOPT Version :9

Sequence 1:NP_523713.2 Gene:Lac / 36363 FlyBaseID:FBgn0010238 Length:359 Species:Drosophila melanogaster
Sequence 2:NP_001072487.1 Gene:opcml / 779942 XenbaseID:XB-GENE-5831850 Length:346 Species:Xenopus tropicalis


Alignment Length:307 Identity:79/307 - (25%)
Similarity:130/307 - (42%) Gaps:53/307 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 FLSTGSTLVIKDSRFSLRYDP-------NSSTYKLQIKDIQETDAGTYTCQVVISTVHKVSAEVK 128
            :|:..:.|...:.::|:  ||       ..|.|.::|:::...|.|.|||.|.... |..::.|.
 Frog    70 WLNRSTILYTGNDKWSI--DPRVVLLANTKSQYSIEIQNVDIYDEGPYTCSVQTDN-HPKTSRVH 131

  Fly   129 LSVRRPPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRR---ENNAILPTDSATYVGNTLR 190
            |.|:..|.|. |.:..:..:|||.|.:.|.|:|.|.|.:|||.   :::..:..|      ..|.
 Frog   132 LIV
QVAPQIL-NISSDITVNEGSTVALRCLATGRPEPAVTWRHFTGKSHRFVSDD------EYLE 189

  Fly   191 IKSVKKEDRGTYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIEAYPPP 255
            |..:.::..|.|.|.|.|.||..|.|.:.|.|.:.|.|:..| ..|.:|.....|.|...|.|..
 Frog   190 ITGITRDQSGQYECSAAN
DVSAPDIRKVRVTVNYPPYISDTR-NTGASLGQKGILRCSASAVPLA 253

  Fly   256 AIVWTKDDIQLA---------NNQHYSISHFATADEYTDSTLRVITVEKRQYGDYVCKATNRFGE 311
            ...|.:::.:||         |..|.||             |....|.::.||:|.|.|:|:.|.
 Frog   254 EFQWYREETRLANGLDGVRIENKDHMSI-------------LTFFNVSEKDYGNYTCVASNKLGN 305

  Fly   312 AEARVNLFETIIPVCPPACGQAYIAGAEDVSATSFALVGILAALLFA 358
            :.|.|.|:          .|...|......::.:.|...:..::|::
 Frog   306 SNASVILY----------AGPGAIHNRSSSASAAIAATCLWCSILYS 342

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
LacNP_523713.2 IG_like 36..131 CDD:214653 17/66 (26%)
FR1 37..50 CDD:409353
Ig strand A' 37..42 CDD:409353
Ig strand B 44..51 CDD:409353
CDR1 51..59 CDD:409353
Ig strand C 59..63 CDD:409353
FR2 60..63 CDD:409353
CDR2 67..81 CDD:409353 2/9 (22%)