DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lac and Negr1

DIOPT Version :10

Sequence 1:NP_523713.2 Gene:Lac / 36363 FlyBaseID:FBgn0010238 Length:359 Species:Drosophila melanogaster
Sequence 2:XP_063138498.1 Gene:Negr1 / 59318 RGDID:708416 Length:423 Species:Rattus norvegicus


Alignment Length:309 Identity:96/309 - (31%)
Similarity:140/309 - (45%) Gaps:52/309 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 GGTVEFDCSVQYAKEYNVLFLKTD------------SDPVFLSTGSTLVIKDSRFSLRYDP---- 91
            |.:|:|    .:|...|:|..|.|            |...:|:..|.:.....::|:  ||    
  Rat    29 GQSVDF----PWAAVDNMLVRKGDTAVLRCYLEDGASKGAWLNRSSIIFAGGDKWSV--DPRVSI 87

  Fly    92 ---NSSTYKLQIKDIQETDAGTYTCQVVISTVHKV-SAEVKLSVRRPPVISDNSTQSVVASEGSE 152
               |...|.|||:::..||.|.|||.|  .|.|.. :.:|.|:|:.||.|.|.|....: :||:.
  Rat    88 STLNKRDYSLQIQNVDVTDDGPYTCSV--QTQHTPRTMQVHLTVQVPPKIYDISNDMTI-NEGTN 149

  Fly   153 VQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIKSVKKEDRGTYYCVADNGVSKGDRRN 217
            |.:.|.|:|.|.|.|:||..:.:..|.::..|    |.|..:.::..|.|.|.|:|.||..|.:.
  Rat   150 VTLTCLATGKPEPAISWRHISPSAKPFENGQY----LDIYGITRDQAGEYECSAENDVSFPDVKK 210

  Fly   218 INVEVEFAPVI------TVPRPRLGQALQYDMDLECHIEAYPPPAIVWTKDDIQLANNQH-YSIS 275
            :.|.|.|||.|      ||...|.|.       :.|.....||||..|.|.:.:|.|.|. ..|.
  Rat   211 VRVVVNFAPTIQEIKSGTVTPGRSGL-------IRCEGAGVPPPAFEWYKGEKRLFNGQQGIIIQ 268

  Fly   276 HFATADEYTDSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLFETIIP 324
            :|:|.     |.|.|..|.:..:|:|.|.|.|:.|...|.:.|.:.|.|
  Rat   269 NFSTR-----SILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNQIIEP 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LacNP_523713.2 IG_like 36..131 CDD:214653 30/107 (28%)
Ig strand B 46..50 CDD:409381 2/3 (67%)
Ig strand C 60..63 CDD:409381 1/2 (50%)
Ig strand E 96..100 CDD:409381 2/3 (67%)
Ig strand F 110..115 CDD:409381 3/4 (75%)
Ig strand G 124..127 CDD:409381 0/2 (0%)
Ig_3 134..208 CDD:464046 24/73 (33%)
Ig 227..318 CDD:472250 29/97 (30%)
Ig strand C 256..260 CDD:409353 1/3 (33%)
Ig strand E 286..290 CDD:409353 2/3 (67%)
Ig strand F 300..305 CDD:409353 2/4 (50%)
Negr1XP_063138498.1 None

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