DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lac and zig-11

DIOPT Version :9

Sequence 1:NP_523713.2 Gene:Lac / 36363 FlyBaseID:FBgn0010238 Length:359 Species:Drosophila melanogaster
Sequence 2:NP_503523.2 Gene:zig-11 / 189580 WormBaseID:WBGene00021305 Length:304 Species:Caenorhabditis elegans


Alignment Length:221 Identity:43/221 - (19%)
Similarity:68/221 - (30%) Gaps:84/221 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 VLFLKTDSDPV----FLSTGS--TLVIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVVIS 118
            :|.|...||..    :.:.|:  |::..:|.||...|.|..|            .|...|||...
 Worm    15 ILALYAPSDAATSQKYTAMGNLQTVIHGESLFSTDIDENRKT------------TGVLWCQVREG 67

  Fly   119 TVH-------------------------------------KVSAEVKLSVRRP------------ 134
            |:|                                     ..|.:.:..::.|            
 Worm    68 TIHYKPTWARFVRIRDQKQFRADIGLDDDKAYLHFGQSKADASGKYRCEIKVPDNSIIIGNMFAY 132

  Fly   135 --PVISDNSTQSVVASEG---------------SEVQMECYASGYPTPTITWRRENNAILPTDSA 182
              ||:.:|.|..:..||.               |..:::|...|||.|.|.|.::...:......
 Worm   133 SHPVVKNNETWELKKSESEPFTVVGPAVYAPLDSAARIQCPIVGYPEPQIVWYKDKFPLEIEGRV 197

  Fly   183 TYVGNTLRIKSVKKEDRGTYYCVADN 208
            .:....|.|:..::||.|.|.|.|.|
 Worm   198 KFTAGVLSIEGAQEEDAGVYRCEATN 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LacNP_523713.2 IG_like 36..131 CDD:214653 19/113 (17%)
FR1 37..50 CDD:409353
Ig strand A' 37..42 CDD:409353
Ig strand B 44..51 CDD:409353
CDR1 51..59 CDD:409353
Ig strand C 59..63 CDD:409353 1/2 (50%)
FR2 60..63 CDD:409353 1/2 (50%)
CDR2 67..81 CDD:409353 4/19 (21%)
Ig strand C' 68..72 CDD:409353 1/7 (14%)
Ig strand C' 79..81 CDD:409353 0/1 (0%)
FR3 84..115 CDD:409353 7/30 (23%)
Ig strand D 84..90 CDD:409353 2/5 (40%)
Ig strand E 94..102 CDD:409353 1/7 (14%)
Ig strand F 108..115 CDD:409353 2/6 (33%)
CDR3 116..124 CDD:409353 2/44 (5%)
FR4 124..130 CDD:409353 1/5 (20%)
Ig strand G 124..130 CDD:409353 1/5 (20%)
Ig_3 134..208 CDD:404760 23/102 (23%)
Ig strand B 153..157 CDD:409353 0/3 (0%)
Ig strand C 166..170 CDD:409353 1/3 (33%)
Ig strand E 187..191 CDD:409353 1/3 (33%)
Ig strand F 201..206 CDD:409353 2/4 (50%)
Ig strand G 215..218 CDD:409353
Ig 227..318 CDD:416386
Ig strand C 256..260 CDD:409353
Ig strand E 286..290 CDD:409353
Ig strand F 300..305 CDD:409353
zig-11NP_503523.2 IGc2 165..223 CDD:197706 16/57 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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