DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lac and ncam2

DIOPT Version :10

Sequence 1:NP_523713.2 Gene:Lac / 36363 FlyBaseID:FBgn0010238 Length:359 Species:Drosophila melanogaster
Sequence 2:NP_571905.1 Gene:ncam2 / 114441 ZFINID:ZDB-GENE-010822-1 Length:795 Species:Danio rerio


Alignment Length:350 Identity:80/350 - (22%)
Similarity:140/350 - (40%) Gaps:63/350 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LAQRTPTISYITQEQIK---DIGGTVEFDCSVQYAKEYNVLF------LKTDSDPVFLSTGSTLV 79
            |....|.:..:.|:...   |.|.:|.|.|....:.|.:|.:      |:.....|..:.|:||.
Zfish   201 LVVNVPPVVSVPQQSFNATADYGESVTFTCRAYGSPEPDVTWHRKGVQLQESERYVMRARGTTLT 265

  Fly    80 IKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVVISTVHKVSAEVKLSVRRPPVISDNSTQS 144
                                :::||:.|.|:|||: ..:...:|..|:.|.|...|.|:  ..::
Zfish   266 --------------------VRNIQQDDGGSYTCR-ASNKAGEVEHELFLKVFVQPHIT--KLRN 307

  Fly   145 VVASEGSEVQMECYASGYPTPTITWRRENNAILPTDS-----------ATYVGNTLRIKSVKKED 198
            |.|.|||...:.|.|.|.|.|.|:|||.::....:|.           ..|..:.|.|..||..|
Zfish   308 VTAVEGSAAMISCKAEGEPLPEISWRRASDGHSFSDGDKSPDGRVEVRGRYGESMLTIVVVKLSD 372

  Fly   199 RGTYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIEAYPPPAIVWTKDD 263
            .|.:.|.|.:.:. |.::::.:::|:||................:::.|.:.:.||..::|.::.
Zfish   373 WGRFDCEALSRIG-GHQKSMFLDIEYAPKFQANHTIFFSWEGNPVNISCDVMSNPPATMLWRREK 436

  Fly   264 IQL----ANNQHYSISHFATADEYT---DSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLFET 321
            :.:    |.|...          ||   .|.|.|..:..|.:|.|.|.|.|..|.......|.:.
Zfish   437 LTIPSEGAGNMRV----------YTAPGRSLLEVTPMSDRDFGRYNCTARNNIGMRFQEFILAQA 491

  Fly   322 IIPVCPPACGQAYIAGAEDVSATSF 346
            .:|..|.:...:.:  |:.|:..:|
Zfish   492 DVPSNPYSVRLSSV--AQRVATVTF 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LacNP_523713.2 IG_like 36..131 CDD:214653 23/103 (22%)
Ig strand B 46..50 CDD:409381 2/3 (67%)
Ig strand C 60..63 CDD:409381 1/8 (13%)
Ig strand E 96..100 CDD:409381 0/3 (0%)
Ig strand F 110..115 CDD:409381 3/4 (75%)
Ig strand G 124..127 CDD:409381 0/2 (0%)
Ig_3 134..208 CDD:464046 26/84 (31%)
Ig 227..318 CDD:472250 18/97 (19%)
Ig strand C 256..260 CDD:409353 0/3 (0%)
Ig strand E 286..290 CDD:409353 2/3 (67%)
Ig strand F 300..305 CDD:409353 2/4 (50%)
ncam2NP_571905.1 IgI_1_NCAM-2 20..112 CDD:409452
Ig strand A 20..25 CDD:409452
Ig strand A' 28..32 CDD:409452
Ig strand B 34..44 CDD:409452
Ig strand C 48..54 CDD:409452
Ig strand C' 57..59 CDD:409452
Ig strand D 65..71 CDD:409452
Ig strand E 73..81 CDD:409452
Ig strand F 88..95 CDD:409452
Ig strand G 100..111 CDD:409452
Ig 131..194 CDD:409353
Ig strand B 131..135 CDD:409353
Ig strand C 144..148 CDD:409353
Ig strand F 181..186 CDD:409353
IgI_1_MuSK 213..296 CDD:409562 23/103 (22%)
Ig strand A' 215..220 CDD:409562 0/4 (0%)
Ig strand B 226..233 CDD:409562 3/6 (50%)
Ig strand C 239..244 CDD:409562 1/4 (25%)
Ig strand C' 246..248 CDD:409562 0/1 (0%)
Ig strand D 255..258 CDD:409562 1/2 (50%)
Ig strand E 262..268 CDD:409562 2/25 (8%)
Ig strand F 275..282 CDD:409562 4/7 (57%)
Ig strand G 288..296 CDD:409562 3/7 (43%)
Ig 298..395 CDD:472250 27/99 (27%)
Ig strand B 316..320 CDD:409353 0/3 (0%)
Ig strand C 329..333 CDD:409353 1/3 (33%)
Ig strand E 361..365 CDD:409353 1/3 (33%)
Ig strand F 375..380 CDD:409353 1/4 (25%)
Ig strand G 388..391 CDD:409353 0/2 (0%)
IG_like 411..488 CDD:214653 18/86 (21%)
Ig strand B 416..420 CDD:409353 0/3 (0%)
Ig strand C 429..433 CDD:409353 0/3 (0%)
Ig strand E 456..460 CDD:409353 2/3 (67%)
Ig strand F 470..475 CDD:409353 2/4 (50%)
FN3 <487..>675 CDD:442628 5/29 (17%)
FN3 494..586 CDD:238020 4/22 (18%)
Blue background indicates that the domain is not in the aligned region.

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