DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lac and igsf5

DIOPT Version :9

Sequence 1:NP_523713.2 Gene:Lac / 36363 FlyBaseID:FBgn0010238 Length:359 Species:Drosophila melanogaster
Sequence 2:XP_002938783.2 Gene:igsf5 / 100495273 XenbaseID:XB-GENE-956741 Length:355 Species:Xenopus tropicalis


Alignment Length:198 Identity:42/198 - (21%)
Similarity:74/198 - (37%) Gaps:46/198 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VQQTLAQRTPTISYITQEQIKDIGGTVEFDCSVQYAKEYNVLFLKTDSDPVFLSTGSTLVIKDSR 84
            |..|:.|....::.::       |....|.|:|          ..|.|...::..|..:|....|
 Frog    23 VAGTILQGPSNVTVLS-------GSDATFQCTV----------APTWSAITWIYQGVQIVSISPR 70

  Fly    85 FSLRYDPNSS--------------TYKLQIKDIQETDAGTYTCQVVISTVHK--VSAEVKLSVRR 133
             .:..|||.:              |..:...::|::::|...|..:.||..:  :|.:||.|:  
 Frog    71 -EVTVDPNQNIVVQNFTNSITRDFTSIVTFINVQKSNSGRIQCFSLSSTNQEAFLSVQVKGSL-- 132

  Fly   134 PPVISDNSTQSVVASEGSEVQMECYASGY-PTPTITWRRENNAI----LPTDSATYVGNTLRIKS 193
                 |.:..|:..:..:.|.:.|.|.|: |.|.:||...|.|.    ..|.|....|....:.|
 Frog   133 -----DIAKTSLSVTINTTVDVSCGAVGWSPIPIMTWVLNNTAASSSEYTTTSTEIQGGLYNVNS 192

  Fly   194 VKK 196
            :.|
 Frog   193 ILK 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LacNP_523713.2 IG_like 36..131 CDD:214653 21/110 (19%)
FR1 37..50 CDD:409353 2/12 (17%)
Ig strand A' 37..42 CDD:409353 0/4 (0%)
Ig strand B 44..51 CDD:409353 1/6 (17%)
CDR1 51..59 CDD:409353 1/7 (14%)
Ig strand C 59..63 CDD:409353 0/3 (0%)
FR2 60..63 CDD:409353 0/2 (0%)
CDR2 67..81 CDD:409353 3/13 (23%)
Ig strand C' 68..72 CDD:409353 0/3 (0%)
Ig strand C' 79..81 CDD:409353 1/1 (100%)
FR3 84..115 CDD:409353 8/44 (18%)
Ig strand D 84..90 CDD:409353 1/5 (20%)
Ig strand E 94..102 CDD:409353 1/21 (5%)
Ig strand F 108..115 CDD:409353 2/6 (33%)
CDR3 116..124 CDD:409353 2/9 (22%)
FR4 124..130 CDD:409353 3/5 (60%)
Ig strand G 124..130 CDD:409353 3/5 (60%)
Ig_3 134..208 CDD:404760 17/68 (25%)
Ig strand B 153..157 CDD:409353 1/3 (33%)
Ig strand C 166..170 CDD:409353 1/3 (33%)
Ig strand E 187..191 CDD:409353 0/3 (0%)
Ig strand F 201..206 CDD:409353
Ig strand G 215..218 CDD:409353
Ig 227..318 CDD:416386
Ig strand C 256..260 CDD:409353
Ig strand E 286..290 CDD:409353
Ig strand F 300..305 CDD:409353
igsf5XP_002938783.2 IG_like 31..128 CDD:214653 19/114 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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