Protein Alignment Nup54 and AT1G24310

DIOPT Version :10

• Sequence 1: NP_610783.1
• Gene: Nup54 / 36360
• FlyBaseID: FBgn0033737
• Length: 610
• Species: Drosophila melanogaster
• Sequence 2: NP_173841.1
• Gene: AT1G24310 / 839047
• AraportID: AT1G24310
• Length: 377
• Species: Arabidopsis thaliana
• Alignment Length: 594
• Identity: 119/594 - (20%)
• Similarity: 184/594 - (30%)
• Gaps: 242/594 - (40%)

  Fly    23 LFGSPFGGTAATSQPAPAFGAQATSTPAFGAQPATSAFGAGS-AFGATAAAPAFGAATGTSAFGG 86
            :||:|                  :|:|:||...:|.|||..| |||..:|.||||..
plant     1 MFGTP------------------SSSPSFGTPSSTPAFGTSSPAFGTPSATPAFGTP-------- 39

  Fly    87 SAFGSTPAFGAATTTTAGTGLGGGGFGGFGAAPATSQAGLFGAPATSAAPPAFSGFGQQAAASTA 151
                |.|:|.:               ||||::       ||.:|.:|..|..    .||......
plant    40 ----SNPSFSS---------------GGFGSS-------LFSSPFSSQQPQQ----QQQQQQQQQ 74

  Fly   152 PASGFSGFGTTTTSAPAFGGFGTSQSTGFGGGAFGSTFGKPANTTVTPGFGGFGGTSFMLGQPQQ 216
            |:|.|.                ...|:.||       |..|.|.|..              |.||
plant    75 PSSLFQ----------------QQPSSNFG-------FQSPFNNTAQ--------------QQQQ 102

  Fly   217 QPAPISADEAFAQSILNVSIFGDERDKIVAKWNYLQATWGTGKMFYSQSAAPVDITPENVMCRFK 281
            .|.|            |..:                    |.:|      |||...|
plant   103 TPFP------------NAQL--------------------TTQM------APVAPIP-------- 121

  Fly   282 AIGYSRMPGKDNKLGLVALNFCRELSAVKPHQQQVIQTLHSLFGSKPNMLVHIDSIKELENKKCQ 346
               ||                                                     |.::..|
plant   122 ---YS-----------------------------------------------------LADRDVQ 130

  Fly   347 IVIYVEEKLQHAPNESKRILATELSNYLNQATLKPQLNNLGVVEALALVLPDEDQLREYLENPPR 411
            .:|   |..:..|...|...     .:|..:..:||                       ....|.
plant   131 AII---EAYKEDPTNPKYAF-----QHLLFSVTEPQ-----------------------YRVKPA 164

  Fly   412 GVDPRMWRQANS-----DNPDPTLYIPVPMVGFNDLKWRVKCQEQETDTHALYIKKVESELTELK 471
            .|...||.:|.|     |:.:.....|..:.||.||..|:|.|::...:....||..:|.:..|:
plant   165 AVSDIMWAEAMSKLEGMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQ 229

  Fly   472 KRHATATAKILEH-KRKLAELSHRILRIIVKQECTRKVG--TSLTPEEEALRTKLQNMLAVVSAP 533
            :....:|...:|. ::|...|..|:||::...|.....|  ..||..|..|..||..:...|..|
plant   230 RHLQASTFPSIERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGP 294

  Fly   534 -TQFKGRLSELLSQMRMQRNQFAANGGAEY-----ALDKEAEDEMKTFLTMQQRAMEVLSDTVNK 592
             .:...|:..|.:..|.|.|..|| |.:.|     .:|:::..:|:..|..:..|:..|.:.:.:
plant   295 GAELSRRVQSLQTISRAQANSIAA-GSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKR 358

  Fly   593 DLRALDVII 601
            |:|.:::::
plant   359 DMRDMEIMV 367

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Nup54	NP_610783.1	Nucleoporin_FG	2..91	CDD:463941	20/68 (29%)
		Nucleoporin_FG	125..220	CDD:463941	21/94 (22%)
		Nup54	409..546	CDD:464011	38/145 (26%)
		Nup54_C	562..600	CDD:465767	8/42 (19%)
AT1G24310	NP_173841.1	Nucleoporin_FG	1..>42	CDD:463941	21/70 (30%)
		Nup54	162..305	CDD:464011	37/142 (26%)