DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13160 and VPS70

DIOPT Version :10

Sequence 1:NP_001260918.1 Gene:CG13160 / 36343 FlyBaseID:FBgn0033720 Length:875 Species:Drosophila melanogaster
Sequence 2:NP_012660.1 Gene:VPS70 / 853590 SGDID:S000003887 Length:811 Species:Saccharomyces cerevisiae


Alignment Length:218 Identity:47/218 - (21%)
Similarity:86/218 - (39%) Gaps:50/218 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 SYLIKGLTNHYQGVQNVIVRLSTKSSNSTSYLLVNSHYDTKPGSPGAGDDAAMVVVMLEVLR--- 196
            :|.||.:::         |.:|.....:...:::.:|.|:. .|..|||..:...::||:.|   
Yeast   418 TYNIKEMSS---------VEVSIPGIFTEGEIIIGAHRDSL-ASSSAGDANSGSAILLEIARGMS 472

  Fly   197 -LVAVSGDPFLHPIIFLFNGAEEQPMQGSHGFITQHRWAANCKAL--LNLDSAGAGG-------- 250
             |:.....| |.||..:....|...:.||..:...|......:||  ||||:|.:|.        
Yeast   473 KLLKHGWKP-LRPIKLISWDGERSGLLGSTDYAEAHAAILRRRALVYLNLDNAISGTNFHCKANP 536

  Fly   251 --RDLLFQGGP------NHPW-LMEHYRNSAPHPFATTTAEEMFEAGIIPSDTDFRIFRDFGVVP 306
              :|::::...      :..| |.:|::      :.:.....:.:.  :.|.|.|:....   ||
Yeast   537 LLQDVIYEAAKLTEFNGHEDWSLFDHWK------YTSNATISLLDG--LSSYTSFQYHLG---VP 590

  Fly   307 GLDM---AGVYNGFVYHTK--FD 324
            ....   |...:|.|||:.  ||
Yeast   591 AAHFQFNANDTSGAVYHSNSVFD 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13160NP_001260918.1 M28_Fxna_like 71..378 CDD:349872 47/218 (22%)
VPS70NP_012660.1 Zinc_peptidase_like 135..>187 CDD:472712
PA_GCPII_like 187..413 CDD:239036
M28_PMSA_TfR_like 419..649 CDD:349871 47/217 (22%)
TFR_dimer <725..799 CDD:461238
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.