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Protein Alignment CG33012 and Folh1

DIOPT Version :9

Sequence 1:	NP_788335.2	Gene:	CG33012 / 36342	FlyBaseID:	FBgn0053012	Length:	912	Species:	Drosophila melanogaster
Sequence 2:	NP_476533.2	Gene:	Folh1 / 85309	RGDID:	70963	Length:	752	Species:	Rattus norvegicus

Alignment Length:	406	Identity:	79/406 - (19%)
Similarity:	130/406 - (32%)	Gaps:	93/406 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   165 SGSF------LHWQMINMYQGIQNVVVKLSSKSSNSTSYLLVNSHYDSKPSSVGTGDAELMVVTM 223
            :|:|      ||....|....|.||:..|.. :.....|:::..|.|:  ...|..|.:.....:
  Rat   336 AGNFSKQKVKLHIHSYNKVTRIYNVIGTLKG-AVEPDRYVILGGHRDA--WVFGGIDPQSGAAVV 397

  Fly   224 LETLRLMATSEETFLHP---IVFLFNGAEEQPFHGSHSFISNHR--WSANCKALVNLDSAGAGGR 283
            .|.:|...|.::....|   |:|....|||....||..:...|.  ......|.:|.||:..|..
  Rat   398 HEIVRTFGTLKKKGWRPRRTILFASWDAEEFGLLGSTEWAEEHSRLLQERGVAYINADSSIEGNY 462

  Fly   284 EILFQGGPNHPWLMKQYKKSAKHPFATTMAEEIFQA-DLIPSDTDFRIFRDFGPVPGLDMAGCYN 347
            .:.....|....|:....|....|      :|.|:. .|..|..:.....:|..:|.:...|..|
  Rat   463 TLRVDCTPLMHSLVYNLTKELPSP------DEGFEGKSLYDSWKEKSPSTEFIGMPRISKLGSGN 521

  Fly   348 GF-----------------------------VYHTKFDRYKVISR----------GALQNTGDNV 373
            .|                             :||:.::.|:::.:          ...|..|..|
  Rat   522 DFEVFFQRLGIASGRARYTKNWKTNKVSSYPLYHSVYETYELVEKFYDPTFKYHLTVAQVRGAMV 586

  Fly   374 LSLVRSI--------------SNAEEMYDTEAH----SEGHSVFFDYLGLFFVYYTESTGTALNI 420
            ..|..||              .:||.:|:...:    .:.:.:.||.|   |......|..|...
  Rat   587 FELANSIVLPFDCQSYAVALKKHAETIYNISMNHPQEMKAYMISFDSL---FSAVNNFTDVASKF 648

  Fly   421 SFSL------GAILVICLS--LWRMAKVTDRRLGTYARAFGMQFLLAILGFLLALG--FPLLMSV 475
            :..|      ..||:..|:  |..:.:.....||...|.|....:.|........|  ||.:...
  Rat   649 NQRLQDLDKSNPILLRILNDQLMYLERAFIDPLGLPGRPFYRHIIYAPSSHNKYAGESFPGIYDA 713

  Fly   476 FYDAGDRTMTYFSNSW 491
            .:|..::..|  |.:|
  Rat   714 LFDINNKVDT--SKAW 727

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.