DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment garz and step

DIOPT Version :9

Sequence 1:NP_610761.2 Gene:garz / 36337 FlyBaseID:FBgn0264560 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster


Alignment Length:496 Identity:125/496 - (25%)
Similarity:192/496 - (38%) Gaps:169/496 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 PKTP----------YEMRELALDN---------------------LLQLWRIPGFVTELYINYDC 510
            |::|          |.:.:||.|:                     :.::.|:|           |
  Fly   151 PRSPSMAPYTSVATYNITKLAPDSPPPASPTLSTQTVNCSDVTTKVTEVQRLP-----------C 204

  Fly   511 DLYCTDMFESLTNLLSK---YTLSATNAVYSTHIIS--MDTLLSVIDSIERNCAASKNSSNNRES 570
            |       |..|.|:||   |..:.......|.|:|  ::.||                :.|.|.
  Fly   205 D-------EPNTELISKRTEYKHTTITTTTRTLIVSRPVELLL----------------NENGEI 246

  Fly   571 LPEAAPATGGSRHSRHNS-----------GLEGI-----------------------VIDSGNSV 601
            :...:|     |.||.||           |..|:                       :.||.||.
  Fly   247 IARRSP-----RKSRSNSLGRMLDVQNEIGTGGLFMEADPCSKNSLPPPPYIDDMRFIDDSSNSQ 306

  Fly   602 AAEEKVENI---------------------------------ASFINASS-------HRLRLQSG 626
            :..|:..||                                 .::||...       .|...|..
  Fly   307 SESERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESCRMLLDRNYINTEQSDNLVILRRPSKQIK 371

  Fly   627 GEGVGITSEQLA-------KVKQKKRLLSQGTERFNQRPEKGIQYLQEHGILNAELDPMQVALFL 684
            .|...:.||..|       |...|.:.:|.|.::||..|:|||:||.|:.:|..  ||..||.||
  Fly   372 DELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNMDPKKGIEYLVENRLLRH--DPQDVAHFL 434

  Fly   685 RENPGLDKKMIGEYISKKKNVDSKILINFVDSFDFTGLRVDQALRLYLETFRLPGEAPLIFLVLE 749
            .:..||:|..||:|:.:|.:.:..:|..||...|||.|.:.||||.:|.:|||||||..|..::|
  Fly   435 YKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMME 499

  Fly   750 HFSDHWHKQNQDPFANVDAAFRLAYAIIMLNMDQHNSNAKRLNVPMTLEDFTKNLRGLNGGEDFD 814
            .|:..:.:.|.|.|.|.|..:.|::||||||...||.:.|  :.| |::.|....||:|.|.|..
  Fly   500 TFAQRYCQLNPDIFTNTDTCYVLSFAIIMLNTSLHNPSVK--DKP-TVDQFISMNRGINNGGDLP 561

  Fly   815 QEMLAQVFNAIKNEEIVMPAEQTGLV--------RENYQWK 847
            :.:|..::.:|:.|...:|.:....:        :|.:.||
  Fly   562 RGLLESLYESIRTEPFKIPQDDGNDLMHTFFNPDKEGWLWK 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
garzNP_610761.2 COG5307 346..>1062 CDD:227623 125/496 (25%)
Sec7_N 370..512 CDD:289549 9/65 (14%)
Sec7 643..830 CDD:279680 74/186 (40%)
stepNP_001036375.2 Sec7 397..577 CDD:279680 73/184 (40%)
PH_GRP1-like 592..710 CDD:269954 3/11 (27%)
PH 596..708 CDD:278594 3/7 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452074
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815698at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10663
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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