DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment garz and Psd4

DIOPT Version :10

Sequence 1:NP_610761.2 Gene:garz / 36337 FlyBaseID:FBgn0264560 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_001128353.1 Gene:Psd4 / 311785 RGDID:1310289 Length:1007 Species:Rattus norvegicus


Alignment Length:699 Identity:137/699 - (19%)
Similarity:227/699 - (32%) Gaps:210/699 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 PQFAEERSDTMLQKRFTIGDAASGATQEKLKRKTVAQAQTAPRKSSAVEEPPQTPQSANLTVPGH 263
            |...:|..|:        ||.:||:.:|.         ||.|:|......|....:..::    .
  Rat   157 PSRPKEDEDS--------GDDSSGSEEEN---------QTWPKKKMPGSSPEWGAEEDSI----F 200

  Fly   264 LKAPILATTPASPAGNILDMQGKITQTPTTTASTGE-----------DETTVPETPVIQVESTES 317
            ...|:...:|.|                 .|::.||           |..|.|..|     .|..
  Rat   201 FDNPLFLESPCS-----------------DTSTEGECFSWGYPNSHLDMKTWPHRP-----QTLD 243

  Fly   318 EPLLDGETGEATSTLAEANSSEYINSVGVRFTQQSTDHDVTSLSPYGLPFIQELFRFLIILCNPL 382
            .||.:|     |....:.|..:        ....:.||...|..|:.:|..:             
  Rat   244 SPLQEG-----TGLWTQENDLD--------LGSNTADHSRCSTPPFPVPSYK------------- 282

  Fly   383 DKQNSDSMMHTGLSLLTVAFEVAADNIGKYEGLLELVKDDLCRNLISLLSSERLSIFAADLQLCF 447
                    ||..|:|            |..||...:..|.:                        
  Rat   283 --------MHPCLAL------------GSTEGAPIVPPDQV------------------------ 303

  Fly   448 LLFESLRGHLKFQLEAYLRKLSEIIASDNPKTPYEMREL-------------ALDNLLQLW--RI 497
                   |...::         :.:...:||.|....||             |..:.:|.|  :|
  Rat   304 -------GETSWE---------DDVGPGSPKAPSVDHELIQESDNFGSDLRPATTHPVQPWGSQI 352

  Fly   498 PGFVTELYINYDCDLYCTDMFESLTNLLSKYTLSATNAVYSTHIISMDTLL---SVIDSIERNCA 559
            |..:::|......||  .|.......|:|:.........:...::.  ||.   |....:|.:|.
  Rat   353 PQSLSDLAPPLHEDL--QDPSRPQKPLISQNGGERDAGCFQEPMLC--TLAPWGSQASLLEPSCP 413

  Fly   560 ASKNSSNNRESLPEAAPATG------GSRHS--------------RHNSGLEGIVIDSGNSVAA- 603
                .|..|.|.|..:|.:.      ...||              :..|.|..:..|....|.: 
  Rat   414 ----ESGGRGSGPRPSPVSSQESSPQDQLHSLKWPQDTSHPSLLEKDKSELSSLKKDETEEVPSL 474

  Fly   604 --EEKVENIASFINAS--SHRLRLQSGGEGVGITSEQLAKVKQKKRLLSQGTERFNQRP--EKGI 662
              |.:.|:.:...:||  .|.:.|.|        :|.|.:............|.:...|  ||  
  Rat   475 MQEAECEDTSRSEDASVTEHHVHLAS--------AEGLPESPMPPEEAQSPEEDWRPSPSREK-- 529

  Fly   663 QYLQEHGILNAELDPMQVALFLRENPGLDKKMIGEYISKKKNVDSKILINFVDSFDFTGLRVDQA 727
               ..:.|.|.| ....:||.|.:..|..|..:..::.|..:....:...::..|.|.|..:|:|
  Rat   530 ---MANSIRNDE-GAWNLALRLYQLNGFRKSEVAAHLRKNNDFSRAVAEAYLSFFQFEGQSLDRA 590

  Fly   728 LRLYLETFRLPGEAPLIFLVLEHFSDHWHKQNQDPFANVDAAFRLAYAIIMLNMDQHNSNAKRLN 792
            ||.:|:...|.||......:|..||..:|..|...|.:||:...|..||::||.|.|..|   :.
  Rat   591 LRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPSVDSVHTLTCAIMLLNTDLHGQN---IG 652

  Fly   793 VPMTLEDFTKNLRGLNGGEDFDQEMLAQVFNAIKNEEIVMPAEQTGLVR 841
            ..|:.::|..||.||..|.:|.:|:|..::.:|::|::....::....|
  Rat   653 KSMSCQEFVTNLNGLQDGGNFPKELLKALYWSIRSEKLEWAVDEEDAAR 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
garzNP_610761.2 PLN03076 <395..>986 CDD:215560 101/492 (21%)
Sec7 643..830 CDD:460178 52/188 (28%)
Psd4NP_001128353.1 Sec7 536..690 CDD:238100 47/157 (30%)
PH_EFA6 724..851 CDD:270107
Blue background indicates that the domain is not in the aligned region.

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