DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment garz and Psd2

DIOPT Version :10

Sequence 1:NP_610761.2 Gene:garz / 36337 FlyBaseID:FBgn0264560 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_038952793.1 Gene:Psd2 / 307500 RGDID:1311075 Length:772 Species:Rattus norvegicus


Alignment Length:707 Identity:154/707 - (21%)
Similarity:241/707 - (34%) Gaps:250/707 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 ESLRGHLKFQLEAYLRKLSEIIAS--------DNPKTPYEMRELALDNLLQL------------- 494
            |||..|:       :..:||...:        .||........|:|.|.|.|             
  Rat    38 ESLNSHV-------ISPVSEKTGTLEGTMEPVGNPDVALPGLSLSLTNGLALGQDGNILEDSVES 95

  Fly   495 --WRIPGFVTE-------------LYINYDC----DLYCTDMFE-SLTNLLSKYTLSATNAVYST 539
              ||..|...|             ..:..||    |:  .|.|. :...:|....|..|.  || 
  Rat    96 RPWRASGPAEEEDTPRSLCLDAEDTQLGLDCPGEPDV--RDGFSATFEKILESELLRGTQ--YS- 155

  Fly   540 HIISMDTL--LSVIDSIERNCAASKN------SSNNRESLPEAA-------------PATGGS-- 581
               |:|:|  ||:.|..: :|.:.:.      ....|:| ||.|             .|.||.  
  Rat   156 ---SLDSLDVLSLTDESD-SCVSFEAPLTPLIQQRARDS-PEPAGLGIGDIGPEGDLGAAGGGDG 215

  Fly   582 ------RHSRHNSGLEGIVI--------------DSGNSVAAEEKVENIASFINASSHRLRLQSG 626
                  |.|..:|..|.::.              :.|.|...:|..|:....:|::|.    .|.
  Rat   216 ELGSPLRRSISSSRSENVLSHLSLTSMPNGFHEDEPGGSGGDDEDDEDTDKVLNSASD----TSL 276

  Fly   627 GEGVGITSEQLAKVKQKKRLLSQGTERFNQRP-EKGIQYLQEHGILNA----ELDPMQ---VALF 683
            .:|:..:..:|:.        |:|.|..:..| ..|.|.:.|.....|    .|:..|   ||..
  Rat   277 KDGLSDSDSELSS--------SEGLEPGSTDPMANGCQGVSEAARRLARRLYHLEGFQRCDVARQ 333

  Fly   684 LRENPGLDKKMIGEYISKKKNVDSKILINFVDSFDFTGLRVDQALRLYLETFRLPGEAPLIFLVL 748
            |.:|....:.:.|||:|               .|||:||.:|:|||.:|:.|.|.||......||
  Rat   334 LGKNNEFSRLVAGEYLS---------------FFDFSGLTLDRALRTFLKAFPLMGETQERERVL 383

  Fly   749 EHFSDHWHKQNQDPFANVDAAFRLAYAIIMLNMDQHNSNAKRLNV--PMTLEDFTKNLRGLNGGE 811
            .|||..:.:.|.|...:.|....|..|:::||.|.|.    .:|:  .|:.:.|..||..||.|:
  Rat   384 THFSRRYCQCNPDDSTSEDGIHTLTCALMLLNTDLHG----HVNIGKKMSCQQFIANLDQLNDGQ 444

  Fly   812 DFDQEMLAQVFNAIKNEEIVMPAEQTGLVRENYQWKV---LLRRGDTHDGHFHYVHDASYDVEIF 873
            ||.:::|..::|:||||::              :|.:   .||:                     
  Rat   445 DFAKDLLKTLYNSIKNEKL--------------EWAIDEDELRK--------------------- 474

  Fly   874 NIVWGASLSALSFMFDKSTETGYQ---RTLAGFSK--------SAAISAHYNL----HSDFDA-- 921
                     :||.:.|....||.:   |.|.|.:.        ||....|..|    |:|.|.  
  Rat   475 ---------SLSELVDDKFGTGTKKVTRILDGGNPFLDVPQALSATTYKHGVLTRKTHADMDGKR 530

  Fly   922 ---------LVLTLCKFTTLLSSVEQHEPAPANNETQQAVNFGLNGKAQAAMRTVFLLVHDYGDC 977
                     ....:.|.|.|....:::.|..|.:|          |..:.|:|....|.....|.
  Rat   531 TPRGRRGWKKFYAVLKGTILYLQKDEYRPDKALSE----------GDLKNAIRVHHALATRASDY 585

  Fly   978 LRES---------WKHIL----------------DLYLQLFRLKLLPKSLIEVEDFC 1009
            .::|         |:..|                :|...:|.....|.::..::.||
  Rat   586 SKKSNVLKLKTADWRVFLFQAPSKEEMLSWILRINLVAAIFSAPAFPAAVSSMKKFC 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
garzNP_610761.2 PLN03076 <395..>986 CDD:215560 148/666 (22%)
Sec7 643..830 CDD:460178 62/196 (32%)
Psd2XP_038952793.1 Sec7 295..463 CDD:238100 59/186 (32%)
PH_EFA6 509..632 CDD:270107 23/132 (17%)

Return to query results.
Submit another query.