DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment garz and Psd2

DIOPT Version :9

Sequence 1:NP_610761.2 Gene:garz / 36337 FlyBaseID:FBgn0264560 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_006254639.1 Gene:Psd2 / 307500 RGDID:1311075 Length:772 Species:Rattus norvegicus


Alignment Length:707 Identity:154/707 - (21%)
Similarity:241/707 - (34%) Gaps:250/707 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 ESLRGHLKFQLEAYLRKLSEIIAS--------DNPKTPYEMRELALDNLLQL------------- 494
            |||..|:       :..:||...:        .||........|:|.|.|.|             
  Rat    38 ESLNSHV-------ISPVSEKTGTLEGTMEPVGNPDVALPGLSLSLTNGLALGQDGNILEDSVES 95

  Fly   495 --WRIPGFVTE-------------LYINYDC----DLYCTDMFE-SLTNLLSKYTLSATNAVYST 539
              ||..|...|             ..:..||    |:  .|.|. :...:|....|..|.  || 
  Rat    96 RPWRASGPAEEEDTPRSLCLDAEDTQLGLDCPGEPDV--RDGFSATFEKILESELLRGTQ--YS- 155

  Fly   540 HIISMDTL--LSVIDSIERNCAASKN------SSNNRESLPEAA-------------PATGGS-- 581
               |:|:|  ||:.|..: :|.:.:.      ....|:| ||.|             .|.||.  
  Rat   156 ---SLDSLDVLSLTDESD-SCVSFEAPLTPLIQQRARDS-PEPAGLGIGDIGPEGDLGAAGGGDG 215

  Fly   582 ------RHSRHNSGLEGIVI--------------DSGNSVAAEEKVENIASFINASSHRLRLQSG 626
                  |.|..:|..|.::.              :.|.|...:|..|:....:|::|.    .|.
  Rat   216 ELGSPLRRSISSSRSENVLSHLSLTSMPNGFHEDEPGGSGGDDEDDEDTDKVLNSASD----TSL 276

  Fly   627 GEGVGITSEQLAKVKQKKRLLSQGTERFNQRP-EKGIQYLQEHGILNA----ELDPMQ---VALF 683
            .:|:..:..:|:.        |:|.|..:..| ..|.|.:.|.....|    .|:..|   ||..
  Rat   277 KDGLSDSDSELSS--------SEGLEPGSTDPMANGCQGVSEAARRLARRLYHLEGFQRCDVARQ 333

  Fly   684 LRENPGLDKKMIGEYISKKKNVDSKILINFVDSFDFTGLRVDQALRLYLETFRLPGEAPLIFLVL 748
            |.:|....:.:.|||:|               .|||:||.:|:|||.:|:.|.|.||......||
  Rat   334 LGKNNEFSRLVAGEYLS---------------FFDFSGLTLDRALRTFLKAFPLMGETQERERVL 383

  Fly   749 EHFSDHWHKQNQDPFANVDAAFRLAYAIIMLNMDQHNSNAKRLNV--PMTLEDFTKNLRGLNGGE 811
            .|||..:.:.|.|...:.|....|..|:::||.|.|.    .:|:  .|:.:.|..||..||.|:
  Rat   384 THFSRRYCQCNPDDSTSEDGIHTLTCALMLLNTDLHG----HVNIGKKMSCQQFIANLDQLNDGQ 444

  Fly   812 DFDQEMLAQVFNAIKNEEIVMPAEQTGLVRENYQWKV---LLRRGDTHDGHFHYVHDASYDVEIF 873
            ||.:::|..::|:||||::              :|.:   .||:                     
  Rat   445 DFAKDLLKTLYNSIKNEKL--------------EWAIDEDELRK--------------------- 474

  Fly   874 NIVWGASLSALSFMFDKSTETGYQ---RTLAGFSK--------SAAISAHYNL----HSDFDA-- 921
                     :||.:.|....||.:   |.|.|.:.        ||....|..|    |:|.|.  
  Rat   475 ---------SLSELVDDKFGTGTKKVTRILDGGNPFLDVPQALSATTYKHGVLTRKTHADMDGKR 530

  Fly   922 ---------LVLTLCKFTTLLSSVEQHEPAPANNETQQAVNFGLNGKAQAAMRTVFLLVHDYGDC 977
                     ....:.|.|.|....:::.|..|.:|          |..:.|:|....|.....|.
  Rat   531 TPRGRRGWKKFYAVLKGTILYLQKDEYRPDKALSE----------GDLKNAIRVHHALATRASDY 585

  Fly   978 LRES---------WKHIL----------------DLYLQLFRLKLLPKSLIEVEDFC 1009
            .::|         |:..|                :|...:|.....|.::..::.||
  Rat   586 SKKSNVLKLKTADWRVFLFQAPSKEEMLSWILRINLVAAIFSAPAFPAAVSSMKKFC 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
garzNP_610761.2 COG5307 346..>1062 CDD:227623 154/707 (22%)
Sec7_N 370..512 CDD:289549 19/100 (19%)
Sec7 643..830 CDD:279680 62/196 (32%)
Psd2XP_006254639.1 Sec7 295..463 CDD:238100 59/186 (32%)
PH_EFA6 509..632 CDD:270107 23/132 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342749
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.830

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