DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment garz and arfgef2

DIOPT Version :9

Sequence 1:NP_610761.2 Gene:garz / 36337 FlyBaseID:FBgn0264560 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_002933226.3 Gene:arfgef2 / 100492055 XenbaseID:XB-GENE-6041969 Length:1792 Species:Xenopus tropicalis


Alignment Length:1798 Identity:379/1798 - (21%)
Similarity:643/1798 - (35%) Gaps:545/1798 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 IEPQVFLAPFLEVIRTADATGP-LTSLALASVNKLLSYGLIDPTSPNLA----DIVERIADAVTH 120
            ||...:..|| |:  ......| :.|.:|..:.||::||.|...:|:..    .:::||.|.:..
 Frog    67 IEADKYFLPF-EL--ACQLKSPRVVSTSLDCLQKLIAYGHITGNAPDKGAPGKRLIDRIVDTICS 128

  Fly   121 ARFMGTDQSSDGVTFMRVIEVLHTLIRSP-----EGAAVSNVSMCEVMLSCFKISFEPRLSELLR 180
            . |.| .|:.:||. :::|:.|.|::..|     ||..:..|.      :|:.|....: :.:.:
 Frog   129 C-FQG-PQTDEGVQ-LQIIKALLTIVTCPFVEIHEGTILHTVR------TCYNIYLASK-NLVNQ 183

  Fly   181 RSAEKSLKDMVLLFFMRLP-QFAEERSDTMLQKRFTIGDAASGATQEKLKRKTVAQAQTAP---- 240
            .:|:.:|..|:.:.|:|:. |..:|:.:.::|             .:|:......:|..:|    
 Frog   184 TTAKATLTQMLNVIFIRMENQALQEQQEYVIQ-------------HQKIHSPVPYRAMGSPNLKH 235

  Fly   241 -RKSSAVEEPPQTPQSANLTVP--GHLKAPILATTPASPAGNI---LDMQGKITQTPTTTASTGE 299
             ..:..:.|.| .|.:.|.|.|  |...|.....|..:.:.|:   ::...:|:....|.|...|
 Frog   236 KNNNHLLNELP-VPGNDNSTNPEQGMEAAEGNEHTEGADSCNVTTDVESVSEISANEETPADIIE 299

  Fly   300 DET-----------TVPETPVIQVESTESEPLL-------------DGETGEATSTLAEANSSEY 340
            |.|           .|.|....:.||.:..|.|             ||::..:|..| |::|...
 Frog   300 DTTDSVCKEQEEREAVDEAATSEAESGDLPPTLNLPESIQTNGISDDGQSISSTDNL-ESDSLHG 363

  Fly   341 INSVGVRFTQQSTDHDVTSLSPYGLPFIQELFRFLII--LC----NPLDKQNSDSMMH------T 393
            .|| |.:|:.                 |.:...||:.  ||    .||.:...|...|      .
 Frog   364 QNS-GAKFSH-----------------ILQKDAFLVFRSLCKLSMKPLGEGPPDPKSHELRSKII 410

  Fly   394 GLSLLTVAFEVAADNIGKYEGLLELVKDDLCRNLISLLSSERLSIFAADLQLCFLLFESLRGHLK 458
            .|.||....:.|......:|..:..:|..||..|.....|....:|...|.:...|....:.|||
 Frog   411 SLQLLLSVLQNAGPVFRTHEMFINAIKQYLCVALSKNGVSSVPDVFELSLAIFLALLSHFKMHLK 475

  Fly   459 FQLEAYLRKLSEIIASDNPKTPYEMRELALDNLLQLWRIPGFVTELYINYDCDLYCTDMFESLTN 523
            .|:|.:.:::...|. :...:.:|.:.:.:..|.::......|.::|:||||||...::||.|.|
 Frog   476 MQVEVFFKEIFLNIL-ETSSSSFEHKWMVIQTLTRICADAQCVVDIYVNYDCDLNAANIFERLVN 539

  Fly   524 LLSKYTLSATNAVYSTHIISM-------------DTLLSVI-------------DSIERNCAASK 562
            .|||.....     |.|.:.|             :.|:|::             .:.:.|....|
 Frog   540 DLSKIAQGR-----SGHELGMTPTQELCLRKKGLECLVSILKCMVEWSKDLYVNPNFQSNLGQEK 599

  Fly   563 NSSNNRESLPEAAPATGGSRHSRHNSGLEGIVIDSGNSVAAEEKVENIASFINASSHRLRLQSGG 627
            ||  :.||.....|.|.|.|:|          :.|.:|..:                        
 Frog   600 NS--DPESCENKTPETTGRRYS----------VSSKDSTVS------------------------ 628

  Fly   628 EGVGITS---------EQLAKVKQKKRLLSQGTERFNQRPEKGIQYLQEHGILNAELDPMQVALF 683
            .|:|.||         ||...:||:|.::..|.|.||::|::|:|||||.|:|...  |..:|.|
 Frog   629 SGIGSTSTQTSIPDDPEQFEVIKQQKEIIEHGIELFNKKPKRGMQYLQEQGMLGTM--PQDIAQF 691

  Fly   684 LRENPGLDKKMIGEYISKKKNVDSKILINFVDSFDFTGLRVDQALRLYLETFRLPGEAPLIFLVL 748
            |.:...||...|||::.:....:.:::..:||..||.......|||::||.|||||||..|..::
 Frog   692 LHQEDRLDFTQIGEFLGENNRFNREVMYAYVDQLDFCDKDFVSALRMFLEGFRLPGEAQKIDRLM 756

  Fly   749 EHFSDHWHK--QNQDPFANVDAAFRLAYAIIMLNMDQHNSNAKRLNVPMTLEDFTKNLRGLNGGE 811
            |.|:..:.:  |.|..||:.|.|:.|||:||||..|.|:...|.   .||.|.:.|..||:|..:
 Frog   757 EKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKN---KMTKEQYIKMNRGINDSK 818

  Fly   812 DFDQEMLAQVFNAIKNEEIVM-----------------PAEQTGLVRENYQWKVLLRRGD----- 854
            |..:|.|:.:::.|:.::|.|                 .:|:...:..|.:.:.:.:...     
 Frog   819 DLPEEYLSSIYDEIEGKKIAMKETKEHTIATKSTKPSVASEKQRRLLYNMEMEQMAKTAKALMEA 883

  Fly   855 --------THDGHFHYVHDASYDVEIFNIVWGASLSALSF-MFDKSTETGYQRTLAGFSKSAAIS 910
                    |...|..:|.      .:|.:||...|:|.|. :.|..........|.|...:..||
 Frog   884 VSHAKAQFTSATHLDHVR------PMFKLVWTPLLAAFSIGLQDCDDSEVANLCLEGIRCAVRIS 942

  Fly   911 AHYNLHSDFDALVLTLCKFTTLLSSVEQHEPAPANNETQQAVNFGLNGKAQAAMRTVFLLVHDYG 975
            ..:.:..:.||.|..|.:|:.|.:|....|....|.:|               ::|:..:.|..|
 Frog   943 CIFTMQLERDAYVQALARFSLLTASSSITEMKQKNIDT---------------IKTLITVAHTDG 992

  Fly   976 DCLRESWKHILDLYLQLFRLKLLPKSLIEVEDFCEANGKAMLILEKPREKQESGLFSSLYSFISS 1040
            :.|..||..||....||           |:........|...|....||::     .|:.|:.|.
 Frog   993 NYLASSWHEILKCISQL-----------ELAQLIGTGVKTRYISGTGRERE-----GSIKSYTSG 1041

  Fly  1041 EGQREPTYEEQDFIKLGRKCIKECQLDQMLQESKFVQLESLQELLKCVLALLKAPQGHKSIGLPY 1105
                     .::|:.||.  :....:|:.       |:.|.||                |:|   
 Frog  1042 ---------GEEFMSLGN--LVGVGVDKK-------QMTSFQE----------------SVG--- 1069

  Fly  1106 AEDQTVFWMEFLVKIVVHNRDRMIPLWPAVRDQMYLLLMGSASC-GY---DYLLNRCIVAVLKLA 1166
                     |...:.||...||              :..||... ||   |::  ||:.||    
 Frog  1070 ---------ETSSQSVVVAVDR--------------IFTGSTRLDGYAIVDFV--RCLCAV---- 1105

  Fly  1167 IYLMRNEELCPIVLQSLKMLLMLKPALLLRISKQISIGIYELLKTSAQNIHSEQDWQII---FNL 1228
                           |:..|..:....:..:.|.:.|..|.:.:...|   ..:.||:|   ||.
 Frog  1106 ---------------SMDELASVHHPRMFSLQKIVEISYYNMNRIRLQ---WSRIWQVIGDHFNK 1152

  Fly  1229 LECVGAGAVPPNYDDA--------QLPLPPNGSAKSDGAISGEEDATAVPERGYTSDSE-ITKAS 1284
            :.|      .||.|.|        ||.:.         .:..:|.|....::.:....| |.|.:
 Frog  1153 VGC------NPNEDVAIFAVDSLRQLSMK---------FLEKDELANFRFQKDFLRPFEHIMKKN 1202

  Fly  1285 AAPAVSSPSAENWI------LVNNKDSEL-------------TTASRPQSPPSLSAPPVNTLVYN 1330
                 .||:..:.:      :||::...:             ..:....:...||...|...|.|
 Frog  1203 -----RSPTIRDMVIRCITQMVNSQAGNIRSGWKNVFAVFYQAASDHNGNIVELSFHTVGHTVTN 1262

  Fly  1331 CQLLDHAPFALFKCWDSLAFIVRSVAHITPYNFEACVRCIRIFVEACR----DGGIRQRRKLESA 1391
            . ...|.|.|:    ||               |:..::|:..|  ||.    |..:...|.:...
 Frog  1263 V-FQQHFPSAI----DS---------------FQDAIKCLSEF--ACNAAFPDTSMEAIRLIRYC 1305

  Fly  1392 AKQKSSKKRSERKPGMASSASSSNLTLLTGDPSDNQINGNAAEQEDLAQRYEQLSIQLLDLMYTL 1456
            ||..|.|.::.|:      .:|.::.:..||                                  
 Frog  1306 AKYVSEKPQALRE------YTSDDMNVAPGD---------------------------------- 1330

  Fly  1457 YTRTAQIFRWWAEEGCTVPQSAALWSPGWCPLLQGIARLAMDRRREVRTHAISCLQQRALLVHDL 1521
                                  .:|..||.|:|..::.:....:.:|||..::.:.:  ::....
 Frog  1331 ----------------------RVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFE--IMKSYG 1371

  Fly  1522 QTLSGTEWCSCFHQVLFPLLNEL-LPESNAAGQLDAALLEESRIRTAT------IMSKVFLQHLT 1579
            .|.....|...| :::|.:.:.: |||..:         |:|...|.|      .:..||.|.. 
 Frog  1372 HTFENHWWHDLF-RIVFRIFDNMKLPEQQS---------EKSEWMTTTCNHALYAICDVFTQFY- 1425

  Fly  1580 TLIELGNAFNELWL-DILDYIERFMKVGSDTLSEQMQEILKNMLLVMHSVRVFHNQDGSLQQALW 1643
                  .|.|.:.| |||..:...:|..::.|:......|:|::::         ........:|
 Frog  1426 ------EALNSVLLSDILSQLHWCVKQDNEQLARSGTNCLENLVIL---------NGEKFSPEVW 1475

  Fly  1644 E------------------LTWRRIGEFLPNLKEELFHDEGKR 1668
            :                  ||||      |...||   |..||
 Frog  1476 DKTCTCMLDIFKSTIPSVLLTWR------PTAMEE---DSDKR 1509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
garzNP_610761.2 COG5307 346..>1062 CDD:227623 190/795 (24%)
Sec7_N 370..512 CDD:289549 35/153 (23%)
Sec7 643..830 CDD:279680 69/188 (37%)
arfgef2XP_002933226.3 PLN03076 6..1706 CDD:215560 379/1798 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815698at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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